Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56750 552 / 0 NDL1 N-MYC downregulated-like 1 (.1) AT2G19620 513 / 0 NDL3 N-MYC downregulated-like 3 (.1.2) AT5G11790 503 / 2e-180 NDL2 N-MYC downregulated-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G230800 [exp] 530 / 0 AT5G56750 524 / 0.0 N-MYC downregulated-like 1 (.1) Potri.018G054900 [exp] 520 / 0 AT5G11790 516 / 0.0 N-MYC downregulated-like 2 (.1) Potri.013G038100 [exp] 455 / 2e-161 AT5G56750 462 / 6e-164 N-MYC downregulated-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001786 [exp] 444 / 7e-157 AT5G56750 465 / 4e-165 N-MYC downregulated-like 1 (.1) Lus10026433 [exp] 437 / 6e-155 AT5G56750 456 / 2e-162 N-MYC downregulated-like 1 (.1) Lus10020241 [exp] 407 / 4e-142 AT5G56750 431 / 1e-151 N-MYC downregulated-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF03096 [poplar] [flax] Ndr Ndr family
Representative CDS sequence Show only first row Show all	>Potri.018G067700.1 pacid=42802228 polypeptide=Potri.018G067700.1.p locus=Potri.018G067700 ID=Potri.018G067700.1.v4.1 annot-version=v4.1 ATGGCTGAGTCAAACGATTCCGTTTTCGTCGATGTGGAAAAGATCTACCTCGGTGGAAAGGAACATCATGTAAGAACTGGTTGTGGTTCCGTGTCTGTTA TAGTGTATGGAGACCAAGACAAGCCAGCACTAATTACTTATCCTGATTTAGCTCTAAACTATATGTCTTGTTTCCAAGGCCTATTCTTTTGTCCTGAAGC GGCATCTTTACTGGTACACAACTTCTGCATTTACCACATTAGTCCTCCAGGTCATGAGTTGGGAGCTGCTCCAATTAGTCCTGATGATCCTTTGCCTTCC GTAGATGACCTTGCAGATCAGATCATTGAGGTTCTCAACTATTTCGGGCTTGGTGCAGTGATGTGCATGGGGGTGACTGCTGGTGCCTACATCCTAACCC TATTTGCTATGAAATATAGACAGCGTGTTCTTGGTTTGATACTTGTGTCCCCTTTATGCAAAACACCCTCTTGGACTGAATGGTTATATAACAAGGTGAT GTCAAATTTGCTATATTTCTATGGCATGTGTGGTTTACTTAAGGAGTTTTTGCTTCAGCGGTACTTCAGCAAGGATGTTCGCGGTAGTGCAGAAGTTCCT GAGTCGGACATAGCTCAAGCATGTAGAGGATTGCTTGATGAGAGGCAGGGTATAAATGTTTTGCGGTTTCTTCAAGCAATTAATCAGAGACCCGACATTA CTAGTGGGTTGAAGAAACTAAGATGCCGCACTCTTGTATTTGTCGGAGATAACTCTCCTTTCCACTCAGAGGCTCTCCACATGATCACGAAGTTGGATCG AAGATATAGTGCCTTGGTCGAGGTCCAGGCTTGTGGATCTATGGTAACAGAAGAACAACCACATGCAATGTTGATACCTATGGAGTACTTCTTCATGGGG TATGGGTTGTACAGGCCATGCCAACTCAGCGACAGTCCAAGGAGCCCACTCAGCCCCTCTTGTATCTCACCAGAGCTTCTCTCTCCTGAAAGCATGGGTT TGAAGCTTAAACCAATAAAAACCCGTGTTTCGCTTGAAGGTTGA
AA sequence Show only first row Show all	>Potri.018G067700.1 pacid=42802228 polypeptide=Potri.018G067700.1.p locus=Potri.018G067700 ID=Potri.018G067700.1.v4.1 annot-version=v4.1 MAESNDSVFVDVEKIYLGGKEHHVRTGCGSVSVIVYGDQDKPALITYPDLALNYMSCFQGLFFCPEAASLLVHNFCIYHISPPGHELGAAPISPDDPLPS VDDLADQIIEVLNYFGLGAVMCMGVTAGAYILTLFAMKYRQRVLGLILVSPLCKTPSWTEWLYNKVMSNLLYFYGMCGLLKEFLLQRYFSKDVRGSAEVP ESDIAQACRGLLDERQGINVLRFLQAINQRPDITSGLKKLRCRTLVFVGDNSPFHSEALHMITKLDRRYSALVEVQACGSMVTEEQPHAMLIPMEYFFMG YGLYRPCQLSDSPRSPLSPSCISPELLSPESMGLKLKPIKTRVSLEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56750		NDL1	N-MYC downregulated-like 1 (.1...		Potri.018G067700 [exp]	0	1
AT3G28430			unknown protein		Potri.006G204600 [exp]	1.00	0.9266
AT1G21480			Exostosin family protein (.1.2...		Potri.005G187400 [exp]	2.44	0.9023
AT3G60260			ELMO/CED-12 family protein (.1...		Potri.002G138700 [exp]	5.29	0.9063
AT1G58350		ZW18	Putative serine esterase fami...		Potri.019G077700 [exp]	7.07	0.8679	Pt-ZW18.1
AT3G51390			DHHC-type zinc finger family p...		Potri.007G060100 [exp]	11.95	0.8723
AT5G48520		AtAUG3	augmin 3, unknown protein		Potri.014G191100 [exp]	15.19	0.8756
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Potri.002G254600 [exp]	17.23	0.8829
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Potri.005G010600 [exp]	18.65	0.8380
AT3G24530			AAA-type ATPase family protein...		Potri.018G081000 [exp]	19.44	0.8894
AT2G35110		NAPP, GRL, NAP1	NCK-ASSOCIATED PROTEIN 1, GNAR...		Potri.015G124200 [exp]	19.44	0.8870

Compare expression of checked genes

Potri.018G067700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.