Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19490 548 / 0 recA DNA recombination family protein (.1) AT3G10140 290 / 5e-95 RECA3 RECA homolog 3 (.1) AT3G32920 278 / 1e-92 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G79050 267 / 2e-85 recA DNA recombination family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G148700 [exp] 675 / 0 AT2G19490 535 / 0.0 recA DNA recombination family protein (.1) Potri.016G057700 [exp] 311 / 5e-103 AT3G10140 423 / 2e-147 RECA homolog 3 (.1) Potri.006G048000 [exp] 310 / 9e-103 AT3G10140 427 / 5e-149 RECA homolog 3 (.1) Potri.001G438900 [exp] 258 / 7e-82 AT1G79050 609 / 0.0 recA DNA recombination family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021585 [exp] 525 / 0 AT2G19490 545 / 0.0 recA DNA recombination family protein (.1) Lus10017151 [exp] 502 / 2e-177 AT2G19490 538 / 0.0 recA DNA recombination family protein (.1) Lus10018037 [exp] 298 / 7e-97 AT3G10140 385 / 2e-131 RECA homolog 3 (.1) Lus10042033 [exp] 294 / 1e-96 AT3G10140 378 / 4e-130 RECA homolog 3 (.1) Lus10042462 [exp] 261 / 3e-83 AT1G79050 637 / 0.0 recA DNA recombination family protein (.1.2) Lus10026204 [exp] 261 / 3e-83 AT1G79050 642 / 0.0 recA DNA recombination family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00154 [poplar] [flax] RecA recA bacterial DNA recombination protein
Representative CDS sequence Show only first row Show all	>Potri.018G067900.2 pacid=42800437 polypeptide=Potri.018G067900.2.p locus=Potri.018G067900 ID=Potri.018G067900.2.v4.1 annot-version=v4.1 ATGGCGAGGCTTGTTACTCTGAGACGCGCTCTTTTTGTTCCCGAGGGACTAAGGAGAGTTGTGCTGGGAACTTCTTCTCAGACACGCAATTTTGCTACAA AAGGTAAAAGAAAATCCAAGTCAGATGGAAGCGAGTCTGGTGAAGAAAATACGTCAAAGAAAGATTTGGCTTTACAACAAGCCCTTGATCAAATTACTAG TCAATTCGGAAAGGGATCTATCATGTGGTTTGGCCGCTCTGAAGCTCCCAAAAATGTTCCAGTCGTGTCTACAGGTTCCTTTGCTCTTGATATAGCACTT GGATGTGGTGGATTTCCAAAGGGTCGCGTGGTGGAGATTTTTGGTCCGGAGGCTTCTGGGAAAACCACTCTTGCTTTACATGTAATTGCTGAAGCACAAA AGCAAGGAGGTTACTGTGTTTTTATGGACGCTGAGCATGCCCTTGATTCATCATTAGCTAAGGCTATTGGGGTGAACACTGAGAACTTGCTTCTTTCGCA ACCTGATTGTGGCGAACAAGCTCTCAGTCTTGTGGACACTCTAATCCGGAGTGGTTCTGTTGATGTCGTTGTTGTTGATAGTGTAGCTGCACTTGTGCCT AAAAGTGAACTTGATGGAGAGATGGGTGATGCTCATATGGCAATGCAAGCCAGATTAATGAGCCAGGCACTTCGCAAACTGAGCCACTCTTTATCACAGT CACAGACTGTTCTGATCTTTATCAATCAGGTGAGAGCTAAGCTTTCAACTTTCGGATTTGGTGGGCCCACTGAAGTAACCTGTGGTGGTAATGCTCTGAA GTTCTATGCTTCTGTACGCCTAAACATAAGAAGGGTAGGGTTTATCAAGAAGGGAGAAGAGACAACAGGAACTCAAGTTCAAGTGAAGATAGCGAAGAAT AAGCTTGCCCCTCCATTTAAAACTGTTCAATTTGAGCTTGAGTTTGGCAAGGGAATAAGTCGTGAATCGGAGATCATAGAATTGGCAGTGAAACACAAAT TCATCAAGAAAAATGGTGCATTTTATGACTGTAATGGTCGCAAGTACCATGGCAAGGAAGCATTGAGGGAGTTTCTAGCTCATAATGATGATGTCCAGGA AGAGCTTATGATGAAGCTCAGGGAGAAGCTACTTGAAGCTGAGACTGATCAGGAACTGAAAGATGAGACTACAGATGGAGAACCAACCCAAGAAAGCATC CCACCTGATTCTACCGATGAAGAAGTAATTGCCGCAGCTGAAGCATATACGTGA
AA sequence Show only first row Show all	>Potri.018G067900.2 pacid=42800437 polypeptide=Potri.018G067900.2.p locus=Potri.018G067900 ID=Potri.018G067900.2.v4.1 annot-version=v4.1 MARLVTLRRALFVPEGLRRVVLGTSSQTRNFATKGKRKSKSDGSESGEENTSKKDLALQQALDQITSQFGKGSIMWFGRSEAPKNVPVVSTGSFALDIAL GCGGFPKGRVVEIFGPEASGKTTLALHVIAEAQKQGGYCVFMDAEHALDSSLAKAIGVNTENLLLSQPDCGEQALSLVDTLIRSGSVDVVVVDSVAALVP KSELDGEMGDAHMAMQARLMSQALRKLSHSLSQSQTVLIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIRRVGFIKKGEETTGTQVQVKIAKN KLAPPFKTVQFELEFGKGISRESEIIELAVKHKFIKKNGAFYDCNGRKYHGKEALREFLAHNDDVQEELMMKLREKLLEAETDQELKDETTDGEPTQESI PPDSTDEEVIAAAEAYT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19490			recA DNA recombination family ...		Potri.018G067900 [exp]	0	1
AT1G63250			DEA(D/H)-box RNA helicase fami...		Potri.001G107300 [exp]	3.74	0.7088
AT2G17580			Polynucleotide adenylyltransfe...		Potri.005G100100 [exp]	4.24	0.7274
AT3G28700			Protein of unknown function (D...		Potri.017G077000 [exp]	5.47	0.6255
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.018G137400 [exp]	6.92	0.6576
AT3G19650			cyclin-related (.1)		Potri.009G088600 [exp]	9.21	0.6758
AT1G09800			Pseudouridine synthase family ...		Potri.003G008500 [exp]	9.79	0.7005
					Potri.003G157401 [exp]	9.79	0.6683
AT5G04895			DEA(D/H)-box RNA helicase fami...		Potri.010G246000 [exp]	10.39	0.6995
AT2G24590		RSZ22a, At-RSZ2...	RS-containing zinc finger prot...		Potri.006G272400 [exp]	15.00	0.6315	SRZ.3
AT3G20240			Mitochondrial substrate carrie...		Potri.010G253600 [exp]	20.97	0.5972

Compare expression of checked genes

Potri.018G067900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.