Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47590 359 / 7e-125 alpha/beta-Hydrolases superfamily protein (.1) AT1G29840 350 / 6e-122 alpha/beta-Hydrolases superfamily protein (.1) AT3G47560 350 / 7e-122 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G11910 334 / 5e-115 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G19550 297 / 4e-100 alpha/beta-Hydrolases superfamily protein (.1) AT1G29830 66 / 1e-11 Magnesium transporter CorA-like family protein (.1.2.3) AT4G17150 44 / 7e-05 alpha/beta-Hydrolases superfamily protein (.1.2) AT2G39400 44 / 9e-05 alpha/beta-Hydrolases superfamily protein (.1) AT4G14290 42 / 0.0006 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G032500 [exp] 476 / 2e-171 AT3G47590 347 / 9e-121 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G227900 [exp] 360 / 1e-125 AT5G11910 363 / 5e-127 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.006G000700 [exp] 43 / 0.0002 AT4G17150 608 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012836 [exp] 379 / 4e-132 AT3G47590 359 / 1e-124 alpha/beta-Hydrolases superfamily protein (.1) Lus10013517 [exp] 342 / 1e-118 AT5G11910 351 / 2e-122 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001114 [exp] 45 / 5e-05 AT4G14290 696 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10034017 [exp] 42 / 0.0005 AT4G14290 667 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Lus10041237 [exp] 42 / 0.0007 AT4G14290 684 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.018G068000.1 pacid=42800584 polypeptide=Potri.018G068000.1.p locus=Potri.018G068000 ID=Potri.018G068000.1.v4.1 annot-version=v4.1 ATGGAAAATCTTGTTGTCTGTAATAATTGTCCAGTGGTAGTAAAAAATTCATTAATCTCAAAAAAGCCCCCCTCTTCACCTAAATCTCCTCTTCGCCATC TACGCTCCTTCTCATCCTTGTTCAATCGCAGCGTGACATTAAGGATGGCTCTCCCTCCCTCTGGCCAAAACCCAGTTGTTGAGCAGCAGAAAGTGATCAT ATCAAACAAACATGGTGAAAAACTGGTGGGCTTATTACATGACACTGGATCCAACGAGATTGTTATATTGTGTCATGGTTTTCGTTCCACAAAGGGAAAC GATACTATGGTGAATCTTGCCAAGGCATTAGAAAAGGAAGGAACCTCTTCCTTCCGCTTCGACTTTGCTGGAAATGGGGAAAGTGAAGGTTCATTTGCGT ATGGTAGTTATTGGAGAGAGGCTGATGATTTACGTTCTGTAATGGAACACTTCCGTGGAGCAAGCCGTGCCATAAGTGCAATTCTTGGGCACAGTAAAGG AGGCGATGTGGTGCTCCTATATGCTTCCAAATATCAGGATATCACTACAGTATTCAATGTTTCTGGCCGTTATGATCTGAAGAGAGGCATTGAAGAACGG ATCGGAAAAGACTTTATGGAAAAGATCAAACAAGATGGATTCATCAATGTTAAGAATAGAACAGGAAGTGTTATTTATCGTGTGACTGAGGAAAGTTTGA TGGATCGCCTGAATACTGATATTCATAAAGCATGCCTTGTAATCAATAAGGAATGCAGGGTCTTCACTATTCATGGATCTGCTGATGAAATCATCCCAGT GGAGGACGCATTAGAGTTTGCCAAGATCATACCAAATCACAGTCTACACATCATAGAAGGAGCAAATCATAGCTACACTTCACATCAAACTGAATTAGCA GCTGTTGTTTTGAAGTTAATGAAGGCAACCTTACAGCAGGACTAA
AA sequence Show only first row Show all	>Potri.018G068000.1 pacid=42800584 polypeptide=Potri.018G068000.1.p locus=Potri.018G068000 ID=Potri.018G068000.1.v4.1 annot-version=v4.1 MENLVVCNNCPVVVKNSLISKKPPSSPKSPLRHLRSFSSLFNRSVTLRMALPPSGQNPVVEQQKVIISNKHGEKLVGLLHDTGSNEIVILCHGFRSTKGN DTMVNLAKALEKEGTSSFRFDFAGNGESEGSFAYGSYWREADDLRSVMEHFRGASRAISAILGHSKGGDVVLLYASKYQDITTVFNVSGRYDLKRGIEER IGKDFMEKIKQDGFINVKNRTGSVIYRVTEESLMDRLNTDIHKACLVINKECRVFTIHGSADEIIPVEDALEFAKIIPNHSLHIIEGANHSYTSHQTELA AVVLKLMKATLQQD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47590			alpha/beta-Hydrolases superfam...		Potri.018G068000 [exp]	0	1
AT2G14880			SWIB/MDM2 domain superfamily p...		Potri.009G092200 [exp]	2.44	0.8338
AT1G31500			DNAse I-like superfamily prote...		Potri.003G106000 [exp]	2.82	0.7888
AT5G55510			Mitochondrial import inner mem...		Potri.011G088500 [exp]	3.00	0.8051
AT2G21170		PDTPI, TIM	PLASTID ISOFORM TRIOSE PHOSPHA...		Potri.009G129500 [exp]	4.47	0.8019	TIM.2
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.014G190900 [exp]	6.85	0.8357
AT1G08110			lactoylglutathione lyase famil...		Potri.009G007200 [exp]	7.34	0.7569
AT1G15390		PDF1A, ATDEF1	peptide deformylase 1A (.1)		Potri.001G171800 [exp]	9.79	0.7780	PDF1.2
AT1G77490		TAPX	thylakoidal ascorbate peroxida...		Potri.005G179200 [exp]	12.64	0.7462
AT2G26840			unknown protein		Potri.009G068300 [exp]	14.49	0.7536
AT3G16230			Predicted eukaryotic LigT (.1....		Potri.001G186600 [exp]	14.83	0.7411

Compare expression of checked genes

Potri.018G068000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.