Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56890 800 / 0 Protein kinase superfamily protein (.1) AT2G20300 461 / 5e-148 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) AT4G02010 367 / 1e-112 Protein kinase superfamily protein (.1) AT5G13160 317 / 4e-97 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT3G58690 313 / 1e-96 Protein kinase superfamily protein (.1) AT3G20530 306 / 2e-94 Protein kinase superfamily protein (.1) AT5G38560 313 / 2e-93 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G20650 302 / 1e-92 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1) AT1G68690 312 / 2e-92 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT5G18610 303 / 2e-91 Protein kinase superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152000 [exp] 1136 / 0 AT5G56890 846 / 0.0 Protein kinase superfamily protein (.1) Potri.003G039100 [exp] 731 / 0 AT5G56890 701 / 0.0 Protein kinase superfamily protein (.1) Potri.002G254600 [exp] 479 / 3e-154 AT2G20300 947 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.014G194300 [exp] 478 / 1e-153 AT2G20300 966 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 375 / 1e-115 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1) Potri.014G119100 [exp] 370 / 9e-114 AT4G02010 993 / 0.0 Protein kinase superfamily protein (.1) Potri.001G060800 [exp] 320 / 2e-98 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.017G110400 [exp] 327 / 6e-98 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.011G137000 [exp] 313 / 4e-97 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011933 [exp] 961 / 0 AT5G56890 880 / 0.0 Protein kinase superfamily protein (.1) Lus10027635 [exp] 952 / 0 AT5G56890 887 / 0.0 Protein kinase superfamily protein (.1) Lus10011917 [exp] 468 / 2e-150 AT2G20300 951 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10022848 [exp] 468 / 3e-150 AT2G20300 912 / 0.0 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1) Lus10037526 [exp] 356 / 8e-109 AT4G02010 865 / 0.0 Protein kinase superfamily protein (.1) Lus10011466 [exp] 367 / 2e-106 AT2G47330 1110 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10015756 [exp] 317 / 3e-97 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10019621 [exp] 306 / 3e-94 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1) Lus10043050 [exp] 306 / 4e-94 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10011148 [exp] 305 / 1e-93 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G068100.25 pacid=42801945 polypeptide=Potri.018G068100.25.p locus=Potri.018G068100 ID=Potri.018G068100.25.v4.1 annot-version=v4.1 ATGGGGCTGGTGATGGTGCCACCCATTCTTCAGCTGCTGGGGAAACTCTCTGCCATTGGCTTTTTTTTCGCAGTTCAAGGATCTACTGAAGGAACGCCTG GTCCCCAACTCCAGCCATTCAGAAGCAGTGTGCCAGCCTCAGAGTCTCTGTCAACTGGGTCAAACTTGCACCCTCCACTTGCATTGCCACCACTCACCTC TGCCCCAGTGCCCCAAACAATCACAGGGCATGTACCATCATATTCTCCTAGTCCTCTGATAGTAACAAAACCACATAATAGAGCTCCTCCTCCCTTGATT TCTCAAGGACATGTACCATCCTTGTCACCAAGTTTTTCAGTTACATCTCCAACGTATAATACAGCTCCTCCACCCACACTTAATCAAGGGCATGAGCCAC CTAAGCCACCAAATGCTCATCGAAGAGAGGCAGCAGTTAGACAGACTCCTGTCTCTGCGTCAAGTGCGCCAGCTGCAGCACCTTCGAGACAGTCACCAGA AAATTCACCAGTCAGCCAATCAAATGCACCTGAAGCTTCATCACTAAGTACTCATAAAAAAGATGTATCCTTCAGTGGGGCTCCTGTCCCAAATTCAGTT TCTCCAGCTGCATCTCCATCAAGGACTTCAAAAGAAAATCAACCAGCAGCCCCCCCTATTGCACCAGCAACGATGCCATCTGCAGTTCCGGTTGTATCAC CAATGGGAGCCATGCCACAAAATTCATCAGCAACCCACCCAGTCATGCCTGGAGAACCCCCTGCTATATTATCAGGTCCAAATGTCCCCCATCCATCTGC TCCTACCCCAAGCATTGATGATAAGAAAGATGAAATTCCAGTTTCTGCACCGCCAAATGAAACACCCACACCTTTATCTCCCATGAGCCATTTTCCAGCT AAAGGTTCTTTTTCTGGTATAGCTCCTTCCACGCACAATGCCATGAGGCACTCTAATGACTCTCCCATTTCTCCTTCATCATTGCCGAAAACTCCTCTGG CTAAACAGCATCACTCTTCTGCGCCTTCACCTTCTATCCCATTTCATAAACAGAACCATGAAAGCAGCAGAATCAGTGACTCTGCTCCTGCATCCTCAAA TCCAACATTTCCGCCATCTTCAAAACAGCAAGGTCCAGTCATGCCTCCATCATTTCTTCCAACAAGCAGGCATAAACAATATGCTTTCTCACCCCTTGGT ACTCCAGATTCTTCAAATAATGCATCACACTACCGCTATCCTAAACCAGTGATCATTGTCTCACCCACTCCTTCACCCACTCAAACTGCAGCATCTGGAT GGACAAAAATGCCAGCTCTTTCCCCTAAAGCTTCTCCTTCTGGGTTTTCTTCAAGAACTCCCAAGATGCCCCCCCTGCCACCACTCCACACATTGCCACC TCCACCTCCTAATGAAGATTGTTCAACGACTGTGTGCACAGAGCCATACACAAATACTCCTCCTGGGTCACCATGTCGCTGTGTCTTGCCCATGCAAGTA GGACTGGGCGTTAGTGTTGCACTGTATACCTTTTTCCCTTTAGTTTCAGAGCTTGCTCAGGAAATTGCTGCTGGCGTTTTTATGAAACAAGGTCAAGTTC GCATTATAGGGGCCAATGCCCCCAGCCAGCAGCTAGAGAAGACAATCGTCCTTATTGACTTGGTTCCCCTTGGAGAAAGATTTGACAATTCAACTGCCCT TTTGACTTATCTAAGATTTTGGAAAAAACAAGTTGTTATAAACCCTTCTTTTTTTGGTGACTATGAAGTATTATATGTGCGTTATCTAGGTTTACCTCCA CCTCCACCTATGGCACCTTTTGGAATTGCAATAATCGATGATGGGCCATATTCTGGCAATGACAACAACGCAAGGATGATAAAGCCCCTAGGGGTTGATG TCCATAAAAGGAAGCGTAAAGATGGGCTTGCTGGTGGCATCATTGCTATTATTGCTGTGTCTGGTTTTGTAGCACTAGTTTTATTCTCTGCTGTTGCTTT GGCATTGCTGTTTAAACATAGAGATCATGCTAGTCAACCGGCATCAGTCCTGCAGCCATTGCCACCTTCAGTTGTGAAACCATCAGGTATTGCTGGGTCA TTGATTGGAAGTGGTCTTAGTTCTGCCTCATTGTCCTTTGCATCTAGTATTCCAGCGTACACAGGATCTGCTAAGACCTTCAGCAAAAGTGACATAGAGC GGGCCACTAGTAGCTTTGATGCTTCAAGAATACTCGGGGAGGGTGGCTTTGGGCTTGTTTACAGTGGTGTTTTAGAAGACGGGACCAAAGTTGCTGTAAA AGTTCTAAAGAGAAATGATCAGCAAGGTGGTCGAGAATTCTTGGCAGAAGTTGAGATGCTTAGCCGCCTTCATCACAGAAATTTAGTCAAGTTGATTGGA ATATGCACAGAGGAATGTTCACGCAGCTTGGTCTACGAGCTCATAGCAAATGGCAGTGTCGAATCTCATCTACATGGGGTTGATAAAGAATCTGCTCTTA ATTGGGATGCTCGGATCAAGATAGCACTTGGTGCAGCTCGAGGTCTAGCTTATCTACATGAGGATTCAAGCCCTCGTGTGATACACAGGGACTTCAAGTC AAGCAACATTTTGTTGGAACATGATTTCACACCAAAAGTCTCAGACTTTGGTTTGGCTAGGACTGCCTTGGATGAGGAAAATAGGCACATATCAACGCAG GTCATGGGAACTTTTGGGTATGTCGCTCCAGAGTATGCAATGACTGGCCATCTTCTTGTGAAGAGTGATGTTTACAGTTATGGTGTAGTCCTTCTTGAGC TCCTAACAGGACGAAAACCAGTGGATATGTCCCAGCCACCTGGTCAAGAGAATCTAGTTGCATGGGCTCGTCCATTTCTAACAACTAAAGAAGGGCTTGA AGTAATTATAGATCCGACTCTAGCAACTGATGTACCTTTTGATAGTGTGGCCAAAGTAGCAGCTATTGCATCAATGTGTGTTCAACCAGAGGTATCACAC CGTCCTTTTATGAGTGAGGTTGTTCAGGCCTTAAAACTAGTATCTAATGAGTGTGATGAGGCAAAGGAACTGGATTCCAGGAGTTCCAGCCAAGATTTAT CTATTTACATGGATGCTGAGGTCAGTGCAGTCTCAGGACAGCTTCGGGATTCTTTACGAAGTCAGGCCCTAGTACATAATTATGATTCCGAGCCAGATAT AGAAAGGGGACTCGTGGATTCATATTTTTTCAGTACATCAGACGGGTGTGGGAGGCAGGGCTCTGGATCATTGAGGAGATGCTCGTCAGGTCCATTGAAA ACAGGAAGGGGCAGAGAGTTGTTTCAGAGAATGAGATTGACAGGGGAAAGTGTGAGTGAACGTGGAACCATCTTCAAAATGTGGCCAGGTTCACATTAA
AA sequence Show only first row Show all	>Potri.018G068100.25 pacid=42801945 polypeptide=Potri.018G068100.25.p locus=Potri.018G068100 ID=Potri.018G068100.25.v4.1 annot-version=v4.1 MGLVMVPPILQLLGKLSAIGFFFAVQGSTEGTPGPQLQPFRSSVPASESLSTGSNLHPPLALPPLTSAPVPQTITGHVPSYSPSPLIVTKPHNRAPPPLI SQGHVPSLSPSFSVTSPTYNTAPPPTLNQGHEPPKPPNAHRREAAVRQTPVSASSAPAAAPSRQSPENSPVSQSNAPEASSLSTHKKDVSFSGAPVPNSV SPAASPSRTSKENQPAAPPIAPATMPSAVPVVSPMGAMPQNSSATHPVMPGEPPAILSGPNVPHPSAPTPSIDDKKDEIPVSAPPNETPTPLSPMSHFPA KGSFSGIAPSTHNAMRHSNDSPISPSSLPKTPLAKQHHSSAPSPSIPFHKQNHESSRISDSAPASSNPTFPPSSKQQGPVMPPSFLPTSRHKQYAFSPLG TPDSSNNASHYRYPKPVIIVSPTPSPTQTAASGWTKMPALSPKASPSGFSSRTPKMPPLPPLHTLPPPPPNEDCSTTVCTEPYTNTPPGSPCRCVLPMQV GLGVSVALYTFFPLVSELAQEIAAGVFMKQGQVRIIGANAPSQQLEKTIVLIDLVPLGERFDNSTALLTYLRFWKKQVVINPSFFGDYEVLYVRYLGLPP PPPMAPFGIAIIDDGPYSGNDNNARMIKPLGVDVHKRKRKDGLAGGIIAIIAVSGFVALVLFSAVALALLFKHRDHASQPASVLQPLPPSVVKPSGIAGS LIGSGLSSASLSFASSIPAYTGSAKTFSKSDIERATSSFDASRILGEGGFGLVYSGVLEDGTKVAVKVLKRNDQQGGREFLAEVEMLSRLHHRNLVKLIG ICTEECSRSLVYELIANGSVESHLHGVDKESALNWDARIKIALGAARGLAYLHEDSSPRVIHRDFKSSNILLEHDFTPKVSDFGLARTALDEENRHISTQ VMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSQPPGQENLVAWARPFLTTKEGLEVIIDPTLATDVPFDSVAKVAAIASMCVQPEVSH RPFMSEVVQALKLVSNECDEAKELDSRSSSQDLSIYMDAEVSAVSGQLRDSLRSQALVHNYDSEPDIERGLVDSYFFSTSDGCGRQGSGSLRRCSSGPLK TGRGRELFQRMRLTGESVSERGTIFKMWPGSH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56890			Protein kinase superfamily pro...		Potri.018G068100 [exp]	0	1
AT1G15130			Endosomal targeting BRO1-like ...		Potri.010G116400 [exp]	2.00	0.7928
AT3G08670			unknown protein		Potri.016G139500 [exp]	2.00	0.8236
AT2G31280	bHLH	bHLH155 ,CPuORF...	conserved peptide upstream ope...		Potri.005G222500 [exp]	3.46	0.7834
					Potri.010G220800 [exp]	4.24	0.7648
AT5G58160			actin binding (.1)		Potri.006G185501 [exp]	4.47	0.8131
AT5G11700			unknown protein		Potri.018G058300 [exp]	7.07	0.7837
AT4G00060		MEE44	maternal effect embryo arrest ...		Potri.014G066000 [exp]	7.34	0.7971
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	10.24	0.7787
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.013G048500 [exp]	11.40	0.7640	CHR923
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Potri.005G071600 [exp]	11.66	0.7447

Compare expression of checked genes

Potri.018G068100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.