Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	NFC906,ATMSI4.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G19520 812 / 0 ATMSI4, ACG1, NFC4, NFC04, FVE MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) AT4G29730 721 / 0 MSI5, NFC5 nucleosome/chromatin assembly factor group C5 (.1) AT2G16780 204 / 2e-60 MSI02, NFC2, NFC02, MSI2 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) AT5G58230 204 / 3e-60 MSI1, MEE70, ATMSI1 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) AT4G35050 201 / 2e-59 NFC3, MSI3 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) AT2G19540 115 / 1e-27 Transducin family protein / WD-40 repeat family protein (.1) AT3G49660 66 / 1e-11 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 62 / 2e-10 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G29260 61 / 7e-10 PEX7, ATPEX7 ARABIDOPSIS PEROXIN 7, peroxin 7 (.1) AT2G32950 57 / 2e-08 FUS1, EMB168, DET340, ATCOP1, COP1 FUSCA 1, EMBRYO DEFECTIVE 168, DEETIOLATED MUTANT 340, ARABIDOPSIS THALIANA CONSTITUTIVE PHOTOMORPHOGENIC 1, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G151800 [exp] 912 / 0 AT2G19520 814 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.003G038800 [exp] 759 / 0 AT2G19520 720 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Potri.009G135100 [exp] 219 / 5e-66 AT2G16780 612 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.004G175300 [exp] 218 / 2e-65 AT2G16780 593 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 2, MULTICOPY SUPPRESSOR OF IRA1 2, Transducin family protein / WD-40 repeat family protein (.1) Potri.002G216200 [exp] 204 / 2e-60 AT5G58230 784 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.014G179700 [exp] 204 / 2e-60 AT5G58230 790 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G074400 [exp] 110 / 8e-26 AT2G19540 631 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.007G094000 [exp] 108 / 2e-25 AT2G19540 623 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Potri.007G009500 [exp] 64 / 5e-11 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027632 [exp] 796 / 0 AT2G19520 815 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10011936 [exp] 595 / 0 AT2G19520 577 / 0.0 MULTICOPY SUPPRESSOR OF IRA1 4, Transducin family protein / WD-40 repeat family protein (.1) Lus10005074 [exp] 203 / 4e-60 AT4G35050 590 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10027848 [exp] 201 / 3e-59 AT4G35050 585 / 0.0 NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3, MULTICOPY SUPPRESSOR OF IRA1 3, Transducin family protein / WD-40 repeat family protein (.1) Lus10033460 [exp] 201 / 7e-59 AT5G58230 781 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020916 [exp] 199 / 2e-58 AT5G58230 782 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10033459 [exp] 174 / 3e-49 AT5G58230 723 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10020917 [exp] 161 / 3e-44 AT5G58230 696 / 0.0 MATERNAL EFFECT EMBRYO ARREST 70, ARABIDOPSIS MULTICOPY SUPRESSOR OF IRA1, Transducin/WD40 repeat-like superfamily protein (.1) Lus10025341 [exp] 115 / 2e-27 AT2G19540 668 / 0.0 Transducin family protein / WD-40 repeat family protein (.1) Lus10024403 [exp] 112 / 1e-26 AT2G19540 659 / 0.0 Transducin family protein / WD-40 repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF12265 [poplar] [flax] CAF1C_H4-bd Histone-binding protein RBBP4 or subunit C of CAF1 complex
Representative CDS sequence Show only first row Show all	>Potri.018G068200.2 pacid=42801709 polypeptide=Potri.018G068200.2.p locus=Potri.018G068200 ID=Potri.018G068200.2.v4.1 annot-version=v4.1 ATGGAACCTGCTGCCACTACTGCTCAAGTGCCAAAGAAGAGAGGCCGAAAACCGAAGCCCAAAGAAGATCAACAGCAGCAGCAGCAGCAGCAGCAGCAGC AAAGTGCTGGTGCCCGAATGAAAGAGGGAAGGAAGGCACAGCAACCCTCTATTGATGACAAGTACACTCAGTGGAAGTCTTTGGTTCCTGTTCTTTATGA CTGGCTAGCCAATCACAACCTCGTCTGGCCATCTCTCTCTTGCCGGTGGGGCCCGCAGCTTGAGCAAGCTACTTACAAGAATCGCCAGCGCCTCTATCTC TCCGAGCAGACTGATGGTAGTGTTCCAAATACTTTGGTCATTGCAAATTGTGATGTTGTCAAGTCTAGAGTTGCTGCTGCGGAACACATATCTCAGTTTA ACGAAGAAGCACGCTCTCCATTTGTTAAGAAGTACAAGACCATCATACATCCTGGAGAGGTAAACAGAATCAGAGAACTCCCCCAGAATAGTAAGATAGT GGCTACTCATACTGACAGCCCTGATGTTCTTATATGGGATGTTGAAGCACAGCCTAACCGACATGCTGTTCTTGGAGCTACAAATTCTCGTCCAGATTTG ATTTTGACTGGACATCAAGACAATGCTGAGTTTGCCCTTGCAATGTGCCCAACTGAACCCTATGTGCTTTCTGGAGGGAAGGACAAGTTGGTAGTTTTGT GGAGTATCCAGGACCATATAACATCATCTGCCTCTGATCCAGCCACTAAGTCTCCAGGATCTGGTGGATCAATCATTAAAAAGACTGGGGATGGCAGTGA TAAAGCCACTGATGGCCCTTCTGTTGGACCACGAGGTATCTACCAAGGGCATGAGGATACAGTTGAAGACGTGGCATTCTGTCCATCCAGTGCGCAGGAG TTTTGTAGTGTAGGAGATGATTCTTGCCTTATATTATGGGATGCTAGAGCTGGTACTAGCCCAGCTATAAAGGTTGAAAGGGCACATAATGCTGATCTTC ACTGTGTTGATTGGAATCCTCAAGATGATAATCTCATTTTAACTGGGTCTGCAGATACTTCTGTTTGCATGTTTGATCGAAGGAATCTCACTTCTAATGG AGTTGGTTTGCCTGTCTATAAATTTGAGGGTCACAAAGCTGCTGTTCTCTGTGTACAGTGGTCTCCAGATAAGGCATCTGTTTTTGGGAGTTCTGCGGAG GATGGTCTCTTAAATATTTGGGATTATGAGAAGGTTGGCAAAAAGACAGAGCGTCCGACTAGAGCTCCAAGTTCTCCTGCAGGATTGTTTTTCCAGCATG CTGGGCACAGGGATAAAGTTGTTGATTTCCATTGGAATGCATCTGATCCTTGGACGGTGGTTAGTGTCTCTGATGACTGTGATACCACTGGCGGGGGAGG GACACTGCAGATATGGCGCATGAGTGATTTGATCTACAGGCCAGAAGATGAGGTTTTGGCAGAGCTTGAGAAGTTCAAGTCACATGTGGTTTCCTGTGCT TCGAAGCCTTGA
AA sequence Show only first row Show all	>Potri.018G068200.2 pacid=42801709 polypeptide=Potri.018G068200.2.p locus=Potri.018G068200 ID=Potri.018G068200.2.v4.1 annot-version=v4.1 MEPAATTAQVPKKRGRKPKPKEDQQQQQQQQQQQSAGARMKEGRKAQQPSIDDKYTQWKSLVPVLYDWLANHNLVWPSLSCRWGPQLEQATYKNRQRLYL SEQTDGSVPNTLVIANCDVVKSRVAAAEHISQFNEEARSPFVKKYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVEAQPNRHAVLGATNSRPDL ILTGHQDNAEFALAMCPTEPYVLSGGKDKLVVLWSIQDHITSSASDPATKSPGSGGSIIKKTGDGSDKATDGPSVGPRGIYQGHEDTVEDVAFCPSSAQE FCSVGDDSCLILWDARAGTSPAIKVERAHNADLHCVDWNPQDDNLILTGSADTSVCMFDRRNLTSNGVGLPVYKFEGHKAAVLCVQWSPDKASVFGSSAE DGLLNIWDYEKVGKKTERPTRAPSSPAGLFFQHAGHRDKVVDFHWNASDPWTVVSVSDDCDTTGGGGTLQIWRMSDLIYRPEDEVLAELEKFKSHVVSCA SKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G19520		ATMSI4, ACG1, N...	MULTICOPY SUPPRESSOR OF IRA1 4...		Potri.018G068200 [exp]	0	1	NFC906,ATMSI4.3
AT4G38130		ATHDA19, ATHD1,...	ARABIDOPSIS HISTONE DEACETYLAS...		Potri.009G170700 [exp]	12.52	0.7057	HDA902,RPD3.1
AT5G40280		ATFTB, WIG, ERA...	WIGGUM, ENHANCED RESPONSE TO A...		Potri.017G073200 [exp]	16.00	0.6300
AT4G23860			PHD finger protein-related (.1...		Potri.003G140000 [exp]	23.83	0.6635
AT3G15080			Polynucleotidyl transferase, r...		Potri.001G373500 [exp]	29.47	0.6240
AT4G22670		ATHIP1, TPR11	tetratricopeptide repeat 11, H...		Potri.003G114000 [exp]	33.46	0.5875
AT5G08500			Transmembrane CLPTM1 family pr...		Potri.004G134500 [exp]	34.92	0.6392
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.016G081700 [exp]	58.13	0.6228
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.009G098000 [exp]	58.17	0.5991
AT4G16830			Hyaluronan / mRNA binding fami...		Potri.014G049300 [exp]	79.52	0.5683
AT3G15460			Ribosomal RNA processing Brix ...		Potri.001G403100 [exp]	94.75	0.5977

Compare expression of checked genes

Potri.018G068200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.