Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19730 603 / 0 Pectin lyase-like superfamily protein (.1) AT5G47500 310 / 1e-103 PME5 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) AT2G36710 310 / 5e-103 Pectin lyase-like superfamily protein (.1) AT1G05310 299 / 8e-99 Pectin lyase-like superfamily protein (.1) AT2G36700 286 / 2e-94 Pectin lyase-like superfamily protein (.1) AT3G29090 277 / 2e-91 PME31, ATPME31 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) AT5G55590 276 / 6e-90 QRT1 QUARTET 1, Pectin lyase-like superfamily protein (.1) AT2G21610 269 / 9e-88 PE11, ATPE11 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) AT5G07430 261 / 2e-84 Pectin lyase-like superfamily protein (.1) AT1G69940 259 / 1e-83 ATPPME1 Pectin lyase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G015700 [exp] 483 / 8e-172 AT5G19730 472 / 2e-167 Pectin lyase-like superfamily protein (.1) Potri.014G117100 [exp] 323 / 3e-108 AT5G19730 320 / 3e-107 Pectin lyase-like superfamily protein (.1) Potri.003G076900 [exp] 319 / 4e-107 AT5G47500 554 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Potri.016G017700 [exp] 305 / 5e-101 AT1G05310 511 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G120100 [exp] 304 / 1e-100 AT2G36710 449 / 3e-157 Pectin lyase-like superfamily protein (.1) Potri.004G128820 [exp] 281 / 6e-93 AT3G29090 562 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1) Potri.006G137100 [exp] 283 / 7e-93 AT1G69940 355 / 1e-121 Pectin lyase-like superfamily protein (.1) Potri.004G156300 [exp] 273 / 2e-89 AT2G21610 457 / 3e-162 A. THALIANA PECTINESTERASE 11, pectinesterase 11 (.1) Potri.001G365700 [exp] 275 / 7e-89 AT5G55590 429 / 1e-149 QUARTET 1, Pectin lyase-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012942 [exp] 624 / 0 AT5G19730 594 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011132 [exp] 593 / 0 AT5G19730 575 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10043035 [exp] 574 / 0 AT5G19730 555 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10041815 [exp] 452 / 4e-159 AT5G19730 446 / 1e-156 Pectin lyase-like superfamily protein (.1) Lus10028364 [exp] 449 / 5e-159 AT5G19730 437 / 4e-154 Pectin lyase-like superfamily protein (.1) Lus10009997 [exp] 317 / 3e-106 AT5G19730 320 / 1e-107 Pectin lyase-like superfamily protein (.1) Lus10004720 [exp] 308 / 8e-103 AT5G47500 519 / 0.0 pectin methylesterase 5, Pectin lyase-like superfamily protein (.1) Lus10010470 [exp] 303 / 5e-100 AT1G05310 521 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10027737 [exp] 295 / 5e-97 AT2G36710 427 / 2e-148 Pectin lyase-like superfamily protein (.1) Lus10041699 [exp] 285 / 2e-94 AT3G29090 527 / 0.0 A. THALIANA PECTIN METHYLESTERASE 31, pectin methylesterase 31 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase
Representative CDS sequence Show only first row Show all	>Potri.018G068400.1 pacid=42801733 polypeptide=Potri.018G068400.1.p locus=Potri.018G068400 ID=Potri.018G068400.1.v4.1 annot-version=v4.1 ATGTCAAACTGTCGATACAACTCTGTCCACCTCTTCGTTCTTACTATTCTCCTCCTCAATTCCGGCCAAACACTATGCCACACCAAAGGGTTAAGAACAA GAAATCCTCGGGGAGTGCAACCGATGATGAATGCGAGCAGAGTTCAATTCTCGGAGCAGCAATTCATGAAGTGGGTCACGTTCGTTGGTAGTCTTAAACA CTCTGTTTTCAAAGCAGCAAAGAATAAGATATTCCCTTCTTACACCCTTATTGTCGCTAAGAATCCATCCGCCGGAGACTTCACAACAATTCAAGAGGCA ATTGATTCTCTTCCCTTCATCAATCTTGTGAGGGTGATCATAAAAATCCGTGCAGGAGTTTACAAAGAAAAGGTGAATATACCTCCATTAAAATCCTTCA TAACCATGGAAGGAGCAGGAGCAGATAATACAATTGTTCAATGGGGAGACACTGCTCAAACACCAGGGGCTAGAGGACAGCCTATGGGAACCTACAGTTC GGCTACTTTTGCTGTGAATTCCCCGTTTTTTGTTGCCAAGAACATCACGTTCAAGAACACGGCGCCGCTGCCGGCACCAGGAGCCATGGGACAGCAAGCA GTGGCATTAAGAATATCGGCAGATACAGCAGCTTTCCTGGGGTGCAAATTCTTGGGAGCGCAGGACACACTATATGATCATGTGGGCAGGCATTATTACA AGGATTGCTACATTGAAGGTTCTGTGGATTTCATTTTTGGCAACGGGTTGTCCTTATTTGAGGGGTGTCACGTGCATGCAATAGCTCAATTCACTGGGGC CCTGACGGCACAAGGCAGGAGTAGTCTTCTAGAAGACACGGGCTTCTCATTTGTGAACTGTAAGGTCACGGGGTCAGGCGCTCTTTACCTTGGGAGGGCG TGGGGCCCCTTTTCTCGGGTCGTCTTTGCTTACACTTACATGGACAACATCATCATTCCCAAGGGCTGGTATAATTGGGGAGATCCTAACCGTGAATTGA CTGTGTTCTATGGGCAATACAAATGCACAGGGCCTGGAGCAAGCTTCGCAGGGAGAGTGTCATGGTCGAGAGAACTCACTGACTCGGAAGCTAAGCCCTT TACTTCACTTACCTTCATCGATGGTTCTGAATGGATCAAAATGTAA
AA sequence Show only first row Show all	>Potri.018G068400.1 pacid=42801733 polypeptide=Potri.018G068400.1.p locus=Potri.018G068400 ID=Potri.018G068400.1.v4.1 annot-version=v4.1 MSNCRYNSVHLFVLTILLLNSGQTLCHTKGLRTRNPRGVQPMMNASRVQFSEQQFMKWVTFVGSLKHSVFKAAKNKIFPSYTLIVAKNPSAGDFTTIQEA IDSLPFINLVRVIIKIRAGVYKEKVNIPPLKSFITMEGAGADNTIVQWGDTAQTPGARGQPMGTYSSATFAVNSPFFVAKNITFKNTAPLPAPGAMGQQA VALRISADTAAFLGCKFLGAQDTLYDHVGRHYYKDCYIEGSVDFIFGNGLSLFEGCHVHAIAQFTGALTAQGRSSLLEDTGFSFVNCKVTGSGALYLGRA WGPFSRVVFAYTYMDNIIIPKGWYNWGDPNRELTVFYGQYKCTGPGASFAGRVSWSRELTDSEAKPFTSLTFIDGSEWIKM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19730			Pectin lyase-like superfamily ...		Potri.018G068400 [exp]	0	1
AT1G60590			Pectin lyase-like superfamily ...		Potri.010G042100 [exp]	1.00	0.8883
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Potri.005G064300 [exp]	1.41	0.8526	PtrWBC5-1
AT4G39010		ATGH9B18	glycosyl hydrolase 9B18 (.1)		Potri.009G123900 [exp]	1.73	0.8408
AT1G79720			Eukaryotic aspartyl protease f...		Potri.003G185175 [exp]	3.46	0.7892
AT3G03770			Leucine-rich repeat protein ki...		Potri.008G014300 [exp]	4.24	0.7769
AT3G17130			Plant invertase/pectin methyle...		Potri.008G102600 [exp]	5.91	0.7708
AT1G48100			Pectin lyase-like superfamily ...		Potri.010G152000 [exp]	9.38	0.7098
AT1G75620			glyoxal oxidase-related protei...		Potri.002G027000 [exp]	11.22	0.6784
AT1G48100			Pectin lyase-like superfamily ...		Potri.008G100500 [exp]	11.53	0.6684
AT1G61900			unknown protein		Potri.011G003000 [exp]	16.97	0.6732

Compare expression of checked genes

Potri.018G068400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.