Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G56590 685 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 621 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G55180 378 / 3e-127 O-Glycosyl hydrolases family 17 protein (.1.2) AT4G26830 378 / 3e-127 O-Glycosyl hydrolases family 17 protein (.1) AT2G01630 374 / 4e-125 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G05790 370 / 1e-123 O-Glycosyl hydrolases family 17 protein (.1) AT1G66250 360 / 1e-119 O-Glycosyl hydrolases family 17 protein (.1) AT3G13560 356 / 6e-118 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT1G11820 349 / 3e-115 O-Glycosyl hydrolases family 17 protein (.1.2) AT2G16230 348 / 4e-115 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G158400 [exp] 370 / 5e-124 AT2G05790 751 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.004G086400 [exp] 369 / 8e-123 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 366 / 2e-122 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G130200 [exp] 361 / 5e-120 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.010G108500 [exp] 359 / 3e-119 AT2G01630 708 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G007300 [exp] 357 / 9e-119 AT4G29360 339 / 1e-111 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.002G261800 [exp] 354 / 7e-118 AT2G16230 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G094400 [exp] 355 / 8e-118 AT5G55180 635 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G153800 [exp] 347 / 4e-115 AT4G34480 649 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012937 [exp] 671 / 0 AT5G56590 617 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10034987 [exp] 604 / 0 AT5G56590 562 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10013465 [exp] 362 / 2e-120 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10004391 [exp] 360 / 5e-120 AT5G55180 602 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10018306 [exp] 358 / 3e-119 AT5G55180 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10007929 [exp] 353 / 3e-117 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040600 [exp] 353 / 3e-117 AT5G55180 630 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 348 / 3e-115 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10031456 [exp] 347 / 4e-114 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10015151 [exp] 345 / 6e-114 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.018G068600.1 pacid=42801325 polypeptide=Potri.018G068600.1.p locus=Potri.018G068600 ID=Potri.018G068600.1.v4.1 annot-version=v4.1 ATGGCGAGAGGAGTCGAGCAGCTTATCTTCTTAATATCACTGTTACTTACTCTTCTGGTTTTGTGCAGAGGAAGCACAATTGGAGTTTGCTATGGAAGAA ATGCTGATGACCTCCCAACTCCTGATAAGGTTGCTCAGTTGGTTCAACAACATAAAATTAAATACTTGAGGATTTATGACTCTAGTATCCAGGTTCTCAA GGCTTTTGCAAACACTGGAGTTGAACTTATGATTGGAATTACAAACTCCGACCTACTACCATTCTCTCAATTCCAATCCAATGTAGATACATGGTTGAAA AACAGTGTCCTTCCTTACTACCCGGCTGCAAGGATCACATGCATAACTGTTGGTGCTGAAGTAACAGAAAGCCCTGGTAATGCCTCTGCCCTAGTTGTAC CTGCCATGCACAATGTCCTCATGGCCCTAAAAAAAGTTGGTCTGCATAAAAAGATCAAAGTTTCAAGCACCCATTCTCTTGGGGTTTTGTCCCGTTCTTT CCCTCCATCTGCGGGGGCTTTTAATAGTAGCCATGCATTCTTTCTGAAACCCATGCTGGAATTCCTCGCTGAAAACCAATCTCCTTTCATGATTGATATT TATCCTTACTATGCTTATAGAGATTCCCCAAATAATGTGTCTTTGGATTATGCTTTATTTGAGTCGTCTTCAGAAGTGATCGATCCAAACACGGGTTTGC TTTATACAAACATGTTTGATGCTCAGATTGATGCCATTTATTTTGCCCTGATGGCTCTGAATTTCAGAACAATTAAAGTAATGGTCACTGAGACAGGCTG GCCATCCAAAGGGTCATCAAAGGAGAAAGCTGCAACTCCTGATAATGCCCAGATTTACAACACCAATTTAATTCGTCATGTCATCAATAACTCTGGTACT CCTGCAAAGCTTGGGGAGGAACTAGATGTTTATATTTTCTCATTGTTCAATGAGAACAGGAAGCCTGGTATGGAATCTGAGAGGAACTGGGGATTATTTT ATCCAGATCAAACAAGTGTCTATAGTCTGGATTTCTCTGGAAAAGGTGTCCTTGATGTGCCTGCAAACAAAAGTTTGACCAGTTTTAATGGCACAACTTG GTGCATTGCTTCAAATAATGCTTCCCAACTTGACTTGCAGAATGCCTTAGATTGGGCATGTGGCTCTGGCGATGTGGATTGCTCTGCTATTCAGCCTAGT CAACCATGTTTTGAGCCGGACACTCTTGTCTCCCATGCATCGTATGCGTTCAACAGTTACTACCAGCAAAATGGGGCTTCTGATGTTGCATGCAGTTTTG GAGGTACAGGAGTTAAAGTCAACAAGGATCCAAGCTATGATAATTGCATGTACATGATCACTGGGACCAACAAAACAGCGGCAAGTAACACAACAGCCAT TGCCTCAACGTCCTCCTCCGCCCAGAATGAAGCCTGTGCATGGATTTCTAGTTTTCTTCTAATGACCTGCGTTGTGTATTTTTTATCTTTTGAACATTAG
AA sequence Show only first row Show all	>Potri.018G068600.1 pacid=42801325 polypeptide=Potri.018G068600.1.p locus=Potri.018G068600 ID=Potri.018G068600.1.v4.1 annot-version=v4.1 MARGVEQLIFLISLLLTLLVLCRGSTIGVCYGRNADDLPTPDKVAQLVQQHKIKYLRIYDSSIQVLKAFANTGVELMIGITNSDLLPFSQFQSNVDTWLK NSVLPYYPAARITCITVGAEVTESPGNASALVVPAMHNVLMALKKVGLHKKIKVSSTHSLGVLSRSFPPSAGAFNSSHAFFLKPMLEFLAENQSPFMIDI YPYYAYRDSPNNVSLDYALFESSSEVIDPNTGLLYTNMFDAQIDAIYFALMALNFRTIKVMVTETGWPSKGSSKEKAATPDNAQIYNTNLIRHVINNSGT PAKLGEELDVYIFSLFNENRKPGMESERNWGLFYPDQTSVYSLDFSGKGVLDVPANKSLTSFNGTTWCIASNNASQLDLQNALDWACGSGDVDCSAIQPS QPCFEPDTLVSHASYAFNSYYQQNGASDVACSFGGTGVKVNKDPSYDNCMYMITGTNKTAASNTTAIASTSSSAQNEACAWISSFLLMTCVVYFLSFEH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G56590			O-Glycosyl hydrolases family 1...		Potri.018G068600 [exp]	0	1
AT3G15380			Plasma-membrane choline transp...		Potri.011G121100 [exp]	1.00	0.8693
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.001G356500 [exp]	2.44	0.8562
AT2G18910			hydroxyproline-rich glycoprote...		Potri.018G090900 [exp]	5.19	0.7853
AT3G22190		IQD5	IQ-domain 5 (.1.2)		Potri.001G215200 [exp]	5.91	0.7785
AT5G04885			Glycosyl hydrolase family prot...		Potri.008G013500 [exp]	5.91	0.8303
AT1G70280			NHL domain-containing protein ...		Potri.008G147700 [exp]	11.22	0.7612
AT1G55360			Protein of Unknown Function (D...		Potri.003G221200 [exp]	12.04	0.7834
AT3G57880			Calcium-dependent lipid-bindin...		Potri.016G049100 [exp]	12.12	0.8515
AT1G13380			Protein of unknown function (D...		Potri.008G120900 [exp]	12.84	0.8197
AT3G26935			DHHC-type zinc finger family p...		Potri.017G063800 [exp]	13.85	0.7736

Compare expression of checked genes

Potri.018G068600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.