Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47240 317 / 1e-106 ATNUDT8 nudix hydrolase homolog 8 (.1) AT5G47650 224 / 9e-72 ATNUDX2, ATNUDT2 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) AT4G25434 209 / 6e-66 ATNUDT10 nudix hydrolase homolog 10 (.1.2) AT2G04430 198 / 2e-61 ATNUDT5 nudix hydrolase homolog 5 (.1) AT4G12720 192 / 3e-59 ATNUDX7, GFG1, AtNUDT7, NUDT7 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) AT2G04450 186 / 7e-57 ATNUDX6, ATNUDT6 nucleoside diphosphates linked to some moiety X 6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, nudix hydrolase homolog 6 (.1) AT2G04440 104 / 2e-26 MutT/nudix family protein (.1) AT3G10620 41 / 0.0005 ATNUDX26 nudix hydrolase homolog 26 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G154300 [exp] 327 / 2e-110 AT5G47240 416 / 2e-145 nudix hydrolase homolog 8 (.1) Potri.003G080400 [exp] 317 / 6e-107 AT5G47240 401 / 1e-139 nudix hydrolase homolog 8 (.1) Potri.005G077500 [exp] 238 / 2e-76 AT5G47650 322 / 2e-110 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G368000 [exp] 235 / 1e-75 AT5G47650 342 / 6e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.016G006000 [exp] 234 / 1e-74 AT5G47650 352 / 3e-122 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.014G168400 [exp] 234 / 2e-74 AT5G47650 331 / 2e-113 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.006G005400 [exp] 233 / 3e-74 AT5G47650 347 / 7e-120 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.003G106100 [exp] 217 / 9e-69 AT5G47650 332 / 9e-115 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Potri.001G127700 [exp] 211 / 9e-67 AT5G47650 323 / 1e-111 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040169 [exp] 325 / 7e-110 AT5G47240 409 / 7e-143 nudix hydrolase homolog 8 (.1) Lus10004371 [exp] 321 / 4e-105 AT5G47240 410 / 2e-139 nudix hydrolase homolog 8 (.1) Lus10012319 [exp] 225 / 9e-72 AT5G47650 310 / 4e-106 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10039079 [exp] 222 / 7e-70 AT5G47650 345 / 3e-119 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10038780 [exp] 222 / 1e-69 AT5G47650 345 / 1e-118 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006365 [exp] 218 / 9e-69 AT4G12720 300 / 1e-101 GROWTH FACTOR GENE 1, Arabidopsis thaliana Nudix hydrolase homolog 7, MutT/nudix family protein (.1.2.3.4) Lus10012320 [exp] 207 / 4e-65 AT5G47650 282 / 2e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10006366 [exp] 207 / 8e-65 AT5G47650 281 / 4e-95 ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2, nudix hydrolase homolog 2 (.1) Lus10018988 [exp] 43 / 0.0002 AT3G10620 288 / 8e-100 nudix hydrolase homolog 26 (.1) Lus10029398 [exp] 42 / 0.0003 AT5G06340 223 / 3e-73 nudix hydrolase homolog 27 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0261 [poplar] [flax] NUDIX PF00293 [poplar] [flax] NUDIX NUDIX domain
Representative CDS sequence Show only first row Show all	>Potri.018G069100.1 pacid=42800576 polypeptide=Potri.018G069100.1.p locus=Potri.018G069100 ID=Potri.018G069100.1.v4.1 annot-version=v4.1 ATGCTGAGCATGACAGCAACAATCAATGCCTGGCAATGTTCAGGATTTCATTGCAAGCAATATGCAAGGATGCCTGAAATCTCGTTGACATCAAGAGGTT TCCTAAAGGTTGGTACGCTTGATTCGAAAACTCCAACTACTGCAGGGCTTAACTCCTCTGCCCTGCCATACGTTGGAGATTATGGTTATGCGAGCAGGAA CATGAATAGAGGAGGAATTCATGTTGTGTCGCCGGATATATCATCACCTTCACCAGGATTTGCAGTGGGATTTCTTGAAGCATTTGACGATGAATACGAT GGAGTCATTATCGATCCAAACAAATTACCTTCCAGTGCTAATGCTTTTGCCTCTGCCCTCCGAGCTGCTTTGTCCAAATGGAAGTTGAAGGGGAGAAAGG GAATATGGCTCAAAATACTGTCGGAACAAGTTGATCTTGTTCCCATAGCGATTAAGGAGGGTTTTCAGTACCACCATGCCGAACCAGGATATGTTATGCT GACTTACTGGATTCCTGATTATCCCTGCATGCTCCCCACCAGCCCTTCGCATCAAATCGGTGTTGGAGGATTTGTGATTAACGACAAAAAGGAGGTCCTA GCAGTGAAGGAAAAATGCCCCTGCAGTTGCTCTAACGTGTGGAAGATGCCTACTGGATATATTAACAAGTCAGAAGACATATTCTGTGGAGCAATGAGAG AAGTAAAAGAAGAGACCGGAGTCGACACAAGTTTCCTCAAGATGGTTGCTTTCAGGCACGCTCACATGTTGGCGTTCGACAAATCAGATATACTATTTGT ATGCATGCTGAGACCATTATCTTATGAAATCGCAATCGATGAGAAAGAAATCCAAGCTGCAATGTGGATGCCACTAGATGAATTTGTGGGGCAGCCATTC TACGAGGAAGACCATATGTCGAGGAAGGTCATTGAGGCCTGTGTTGCCGCCTATGAAGATCGTTATAGTGGGTTCACTGCTCATCAACTAACCTCGAAAC TTGATGGCCAATCATCCCTCTTGTATTACGACTGTTCTTCAGGCTGA
AA sequence Show only first row Show all	>Potri.018G069100.1 pacid=42800576 polypeptide=Potri.018G069100.1.p locus=Potri.018G069100 ID=Potri.018G069100.1.v4.1 annot-version=v4.1 MLSMTATINAWQCSGFHCKQYARMPEISLTSRGFLKVGTLDSKTPTTAGLNSSALPYVGDYGYASRNMNRGGIHVVSPDISSPSPGFAVGFLEAFDDEYD GVIIDPNKLPSSANAFASALRAALSKWKLKGRKGIWLKILSEQVDLVPIAIKEGFQYHHAEPGYVMLTYWIPDYPCMLPTSPSHQIGVGGFVINDKKEVL AVKEKCPCSCSNVWKMPTGYINKSEDIFCGAMREVKEETGVDTSFLKMVAFRHAHMLAFDKSDILFVCMLRPLSYEIAIDEKEIQAAMWMPLDEFVGQPF YEEDHMSRKVIEACVAAYEDRYSGFTAHQLTSKLDGQSSLLYYDCSSG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47240		ATNUDT8	nudix hydrolase homolog 8 (.1)		Potri.018G069100 [exp]	0	1
AT2G29100		ATGLR2.9	GLUTAMATE RECEPTOR 2.9, gluta...		Potri.004G052500 [exp]	1.73	0.9630
AT5G02540			NAD(P)-binding Rossmann-fold s...		Potri.006G083900 [exp]	2.44	0.9612
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012900 [exp]	4.58	0.9497
AT3G24420			alpha/beta-Hydrolases superfam...		Potri.006G155500 [exp]	6.48	0.9356
AT1G17840		AtABCG11, WBC11...	DESPERADO, CUTICULAR DEFECT AN...		Potri.005G073050 [exp]	8.06	0.9367
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.014G043500 [exp]	9.38	0.9330
AT3G45290		ATMLO3, MLO3	MILDEW RESISTANCE LOCUS O 3, S...		Potri.006G129700 [exp]	10.09	0.9363
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012600 [exp]	10.81	0.9285
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Potri.009G151400 [exp]	15.09	0.9202	ATMGT10.1
AT2G29120		ATGLR2.7	GLUTAMATE RECEPTOR 2.7, gluta...		Potri.018G012100 [exp]	18.57	0.9054

Compare expression of checked genes

Potri.018G069100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.