Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26270 807 / 0 PFK3 phosphofructokinase 3 (.1) AT5G56630 795 / 0 PFK7 phosphofructokinase 7 (.1) AT4G32840 764 / 0 PFK6 phosphofructokinase 6 (.1) AT4G29220 754 / 0 PFK1 phosphofructokinase 1 (.1) AT5G61580 690 / 0 PFK4 phosphofructokinase 4 (.1.2) AT5G47810 478 / 1e-166 PFK2 phosphofructokinase 2 (.1) AT2G22480 416 / 8e-141 PFK5 phosphofructokinase 5 (.1) AT1G20950 74 / 8e-14 Phosphofructokinase family protein (.1) AT1G76550 74 / 9e-14 Phosphofructokinase family protein (.1) AT4G04040 73 / 2e-13 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G152600 [exp] 901 / 0 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 711 / 0 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2) Potri.016G002700 [exp] 513 / 7e-180 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.006G235132 [exp] 413 / 3e-144 AT4G26270 399 / 3e-139 phosphofructokinase 3 (.1) Potri.007G010300 [exp] 389 / 1e-130 AT2G22480 816 / 0.0 phosphofructokinase 5 (.1) Potri.006G235066 [exp] 333 / 2e-113 AT4G26270 331 / 7e-113 phosphofructokinase 3 (.1) Potri.001G079501 [exp] 185 / 6e-56 AT5G61580 235 / 2e-75 phosphofructokinase 4 (.1.2) Potri.001G079450 [exp] 84 / 8e-20 AT5G61580 90 / 7e-23 phosphofructokinase 4 (.1.2) Potri.002G003100 [exp] 79 / 3e-15 AT1G76550 1034 / 0.0 Phosphofructokinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043044 [exp] 837 / 0 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10011143 [exp] 835 / 0 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10035001 [exp] 810 / 0 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10005488 [exp] 761 / 0 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10006032 [exp] 737 / 0 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10008812 [exp] 501 / 2e-175 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1) Lus10002648 [exp] 405 / 1e-136 AT2G22480 868 / 0.0 phosphofructokinase 5 (.1) Lus10012738 [exp] 402 / 2e-135 AT2G22480 869 / 0.0 phosphofructokinase 5 (.1) Lus10039993 [exp] 191 / 2e-58 AT5G47810 236 / 5e-77 phosphofructokinase 2 (.1) Lus10025167 [exp] 78 / 5e-15 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [poplar] [flax] PFK PF00365 [poplar] [flax] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Potri.018G069200.7 pacid=42801865 polypeptide=Potri.018G069200.7.p locus=Potri.018G069200 ID=Potri.018G069200.7.v4.1 annot-version=v4.1 ATGGAATCAAATGGTATCTCCGAGCAGAAGATCATCACCGGTGATTCTGGTTACATTCTTCAAGACGTTCCTCATTTAACCGATTACATTCCTGATCTCC CGACTTATTCCAATCCTCTACAAGACAATCCTGCCTACGCCGTTGTCAAGCAGTATTTTGTCCACGTCGATGACTCTGTTCCACAAAAGATTGTGGTTCA CAAGGATAGCCCCAGAGGGATACATTTCCGCCGTGCCGGACCCCGTCAAAAGATCTATTTTGAGCCAGATGAAGTTCGTGCTTGCATTGTCACATGTGGG GGTCTCTGCCCGGGACTCAATACCGTAATTAGAGAAATAGTGTACAGCTTGTACCATATGTATGGCGTGACTAGAGTGCTGGGGATAGATGGTGGTTACA AGGGTTTTTATGCTCGAAACACGATTCCTCTGACACCTAAGGTTGTGAATGACATTCATAAACGTGGTGGAACTATCCTTGGGACGTCACGAGGTGGCCA TGATACTTCAAAAATTGTCCACAGCATTCAGGATCGGGGCATTAATCAAGTTTACATTATTGGAGGAGATGGAACTCAGAAAGGGGCATCGGTGATTTTT GAGGAAATTAGAAGGCGGGGTCTTAAAGTCGTAGTTGCTGGAATTCCCAAAACCATTGATAATGACATTCCGGTTATTGACAGGTCCTTTGGCTTTGACA CTGCTGTTGAGGAGGCTCAACGTGCTATTAATGCAGCACATGTTGAGGCTGAAAGTGTCGAGAATGGTATTGGTCTTGTGAAGTTGATGGGTCGTTACAG TGGGTTTATTGCTATGTATGCTACTCTTGCAAGCCGGGATGTGGATTGTTGCTTGATTCCAGAGTCCCCTTTTTATTTAGATGGGAAAGGTGGACTATAT GAATACATAGAGAAACAACTGAAAGAAAATGGGCACATGGTTATTGTGATAGCTGAAGGTGCAGGCCAGGAGCTGCTTTCTGAAAGCATGCAACAAGATG CTTCAGGAAATAAGCTTCTTCAAGATGTTGGGCTGTGGATATCACAGGGGATCAAGGACTATTTTTCGAAGCAGAAGAAGATGACTATAAACCTCAAATA TATAGATCCTACATATATGATCCGTGCCGTACCAGGCAATGCAGCTGACAATGTTTACTGCACACTTCTGGCTCAAAGTGTTGTGCATGGAGCAATGGCT GGTTATACAGGCTTCACTAGTGGTCTTGTTAATGGCAGACAAACATACATACCCTTCTATCGTATCAATGAAAAACAGCACAAGGTGGTTATAACAGATA GGATGTGGGCTAGGCTCTTATCGTCAACAAATCAGCCCAGCTTTATTAGTAATAAAGAGGTCATCGAAGATAGAAAGGAGCATATCTCTGGAGAAGAGAA AAACGAAGAAACCCAGTTGTTGGATGATGAAAATTGTGCTGATGTAGTTCCAGAGAATGTAGACAACAGCCAACCGTGA
AA sequence Show only first row Show all	>Potri.018G069200.7 pacid=42801865 polypeptide=Potri.018G069200.7.p locus=Potri.018G069200 ID=Potri.018G069200.7.v4.1 annot-version=v4.1 MESNGISEQKIITGDSGYILQDVPHLTDYIPDLPTYSNPLQDNPAYAVVKQYFVHVDDSVPQKIVVHKDSPRGIHFRRAGPRQKIYFEPDEVRACIVTCG GLCPGLNTVIREIVYSLYHMYGVTRVLGIDGGYKGFYARNTIPLTPKVVNDIHKRGGTILGTSRGGHDTSKIVHSIQDRGINQVYIIGGDGTQKGASVIF EEIRRRGLKVVVAGIPKTIDNDIPVIDRSFGFDTAVEEAQRAINAAHVEAESVENGIGLVKLMGRYSGFIAMYATLASRDVDCCLIPESPFYLDGKGGLY EYIEKQLKENGHMVIVIAEGAGQELLSESMQQDASGNKLLQDVGLWISQGIKDYFSKQKKMTINLKYIDPTYMIRAVPGNAADNVYCTLLAQSVVHGAMA GYTGFTSGLVNGRQTYIPFYRINEKQHKVVITDRMWARLLSSTNQPSFISNKEVIEDRKEHISGEEKNEETQLLDDENCADVVPENVDNSQP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26270		PFK3	phosphofructokinase 3 (.1)		Potri.018G069200 [exp]	0	1
AT4G24160			alpha/beta-Hydrolases superfam...		Potri.005G235200 [exp]	3.16	0.9606
AT1G19940		ATGH9B5	glycosyl hydrolase 9B5 (.1)		Potri.005G115400 [exp]	11.53	0.8937
AT1G24620			EF hand calcium-binding protei...		Potri.008G134300 [exp]	12.60	0.8767
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.001G042700 [exp]	14.21	0.9524	Pt-HSP70.10
AT4G22740			glycine-rich protein (.1.2)		Potri.001G117400 [exp]	14.28	0.9150
AT3G09350		Fes1A	Fes1A (.1.2.3)		Potri.016G100500 [exp]	16.37	0.8934
AT1G61140		EDA16	embryo sac development arrest ...		Potri.004G037700 [exp]	16.49	0.8921
AT2G04520			Nucleic acid-binding, OB-fold-...		Potri.014G093801 [exp]	16.79	0.8863
AT1G03910			unknown protein		Potri.001G242900 [exp]	17.32	0.9506
AT1G10170		ATNFXL1	NF-X-like 1 (.1)		Potri.012G043700 [exp]	19.36	0.9334

Compare expression of checked genes

Potri.018G069200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.