Plant FIBer expression Database

Potri.018G069450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G29210 790 / 0 GGT4, GGT3 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2)
AT4G39640 569 / 0 GGT1 gamma-glutamyl transpeptidase 1 (.1.2)
AT4G39650 558 / 0 GGT2 gamma-glutamyl transpeptidase 2 (.1)
AT1G69820 234 / 1e-73 GGT4, GGT3 gamma-glutamyl transpeptidase 4, gamma-glutamyl transpeptidase 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G082800
[exp]
605 / 0 AT4G39640 786 / 0.0 gamma-glutamyl transpeptidase 1 (.1.2)
Potri.001G333400
[exp]
588 / 0 AT4G39640 768 / 0.0 gamma-glutamyl transpeptidase 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035003
[exp]
852 / 0 AT4G29210 754 / 0.0 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2)
Lus10012925
[exp]
723 / 0 AT4G29210 644 / 0.0 gamma-glutamyl transpeptidase 3, gamma-glutamyl transpeptidase 4 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0052 NTN PF01019 G_glu_transpept Gamma-glutamyltranspeptidase
Representative CDS sequence
>Potri.018G069450.1 pacid=42801109 polypeptide=Potri.018G069450.1.p locus=Potri.018G069450 ID=Potri.018G069450.1.v4.1 annot-version=v4.1
ATGGGGCGACAGAGCACCGTAGCTCCGCTCTTGGGCACTGATGTCTCATCAACAAATTATCATATTTATGGCAAGAAGAATTGGAGTCGCAAAGCTTTGT
GCTTCTTTCTTGCCTCCGTAACCATTATTACAACTGTAGGCCTGCTAACTTTTGGAGCCCACTTCACTTGTTGGGTACTGAGAGGAGGAAAAAACTACAG
TGAGAGGATTGAAGTTAACAATGCTGAGATTGTCGAGTCAGAACAAGGTGTTGTTGCTGCTGATGATGCCCGGTGTTCTGAAATCGGTGCATCAATGCTT
AGACAAGGTGGGCATGCTGTTGATGCTGCAGTGTCAACTGCTTTGTGCGTTGGTGTTGTTAATCCAGTGGGAAGTGGAATAGGAGGTGGAGCTTTCATGA
TTGTCAGGTCTTCATCTACTTCTAAAACTCAAGCTTTTGACATGAGAGAAACTGCTCCCGGGGCAGCTTCACAGAATATGTATGCAAACAACTTGAATAA
CAAGTATTCAGGTGCCCTGTCCATGGGAGTTCCCGGTGAGATTGCTGGCCTCCATGAAGCTTGGCTGCAACATGGGCGTTTGAATTGGAGGACTCTATTC
CAACCTGCCATAAAACTTGCCAGGGATGGTTTTGTTGTTGCTCCCTATCTTGCATCTTCCATTGCTAAAAGTGCCAAAAAAATCATGAATGATCCTGGGT
TGCAGCAAGTGTTCGCTCCGAATGGGAGGTTGTTACAAGCTGGTGATAAATGCTCTAATCTGGAGCTAGCCCAAAGCCTGGAAGCAGTCGCAGAACAAGG
TCCACAAGCCTTTTATAATGGCACTGTCGGTGAGAAATTTGTAAAAGATGTCAGAGATGCTGGTGGGATTCTAACGATGGAAGATCTAAAGAATTACAAG
GTGGATATAATGGATGCCTTAGCTGCTAACGTTACGGGCTACACTATATATGGAATGCCACCACCTTCAAGTGGAACACTTGGAATGTCTCTGGTCTTAA
ACATCCTAAATAGTTATGGAAGTTCAAAAGCTGCAGAGGGAAATCTTGGTCTTCATCGCTTGATTGAAGCGATGAAGCACATGTTTGCCGTTCGAATGAA
CTTGGGGGACCCTGCTTTCATAAACACAGCCAAATATATGTCTGAAATGCTTTCCCAATCTTACGCTGATAAAATACAGAAAATGATAGTGGACAATACC
ACATTCCCTCCAGAATATTACATGAATATGGAAAGTAGGTGGAGTCAGCTTAGAGATCATGGAACCAGCCACTTTTGCATTGTGGATGCAGAGCGAAATG
CTGTATCAATGACAACAACAATAAATTATGGTTTTGGAGCTGGAGTTCTCTCGCCCTCTACTGGAATTCTGCTCAACAATGAGATGGGTGATTTCTCAGC
ACCCACAGAGATAACTCCTGACATGCTCCCTCCTGCTCCAGCAAATTTTATCGAACCCAACAAGAGACCTTTATCTTCCATGACTCCTATTATTGTCACC
AAGGACAATCAGCTAGCTGGGGTCATGGGTGGTAGTGGCGGACTTTTCATCATTCCAGCGGTGATACAAGTCTTTCTTAATCATTTTGTCTTGAGGATGG
AACCTTTAACTGCAGTCGAGAGTCCAAGGGTCTATCACAAGTTAATACCCAATACTGTATTGTACGAAAACTGGACAGTAATAGATGGCAAGCACATAGA
ACTTGCAGGGGACAGAAAAGCTTTCTTGGAGGAAAGGGGTCATCAGTTGCTGGCTCAGGCAGGAGGAGCTATTGTCCAGCTTGTTGTTCAGACCCTCCAA
AGCCCTATCCACGTGGACAGCGAAAATTCGAGAGATTCTGTAAATTCCCAAATACTCCATGGAACGCTTACGGCAGTGAGCGATCCAAGAAAAGATGGCA
GGCCTGCAGCAATTTGA
AA sequence
>Potri.018G069450.1 pacid=42801109 polypeptide=Potri.018G069450.1.p locus=Potri.018G069450 ID=Potri.018G069450.1.v4.1 annot-version=v4.1
MGRQSTVAPLLGTDVSSTNYHIYGKKNWSRKALCFFLASVTIITTVGLLTFGAHFTCWVLRGGKNYSERIEVNNAEIVESEQGVVAADDARCSEIGASML
RQGGHAVDAAVSTALCVGVVNPVGSGIGGGAFMIVRSSSTSKTQAFDMRETAPGAASQNMYANNLNNKYSGALSMGVPGEIAGLHEAWLQHGRLNWRTLF
QPAIKLARDGFVVAPYLASSIAKSAKKIMNDPGLQQVFAPNGRLLQAGDKCSNLELAQSLEAVAEQGPQAFYNGTVGEKFVKDVRDAGGILTMEDLKNYK
VDIMDALAANVTGYTIYGMPPPSSGTLGMSLVLNILNSYGSSKAAEGNLGLHRLIEAMKHMFAVRMNLGDPAFINTAKYMSEMLSQSYADKIQKMIVDNT
TFPPEYYMNMESRWSQLRDHGTSHFCIVDAERNAVSMTTTINYGFGAGVLSPSTGILLNNEMGDFSAPTEITPDMLPPAPANFIEPNKRPLSSMTPIIVT
KDNQLAGVMGGSGGLFIIPAVIQVFLNHFVLRMEPLTAVESPRVYHKLIPNTVLYENWTVIDGKHIELAGDRKAFLEERGHQLLAQAGGAIVQLVVQTLQ
SPIHVDSENSRDSVNSQILHGTLTAVSDPRKDGRPAAI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G29210 GGT4, GGT3 gamma-glutamyl transpeptidase ... Potri.018G069450
[exp]
0 1
AT5G51400 PLAC8 family protein (.1) Potri.003G108800
[exp]
2.82 0.7729
Potri.009G086900
[exp]
4.00 0.7525
AT5G27840 TOPP8 Calcineurin-like metallo-phosp... Potri.005G024100
[exp]
15.39 0.7586 Pt-TOPP8.1
AT1G71940 SNARE associated Golgi protein... Potri.019G083500
[exp]
21.79 0.6874
AT1G71691 GDSL-like Lipase/Acylhydrolase... Potri.010G137100
[exp]
23.91 0.7029
AT1G25682 Family of unknown function (DU... Potri.008G115700
[exp]
30.65 0.6628
AT1G65730 YSL7 YELLOW STRIPE like 7 (.1) Potri.005G093800
[exp]
31.93 0.7511
AT3G07550 RNI-like superfamily protein (... Potri.017G056400
[exp]
48.53 0.6715
AT3G14690 CYP72A15 "cytochrome P450, family 72, s... Potri.011G101700
[exp]
54.74 0.6213
AT5G44400 FAD-binding Berberine family p... Potri.011G161600
[exp]
61.50 0.6666

Potri.018G069450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.