Plant FIBer expression Database

Potri.018G069800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G29170 293 / 2e-101 ATMND1 Mnd1 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10002503
[exp]
302 / 1e-103 AT4G29170 337 / 2e-117 Mnd1 family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF03962 Mnd1 Mnd1 HTH domain
Representative CDS sequence
>Potri.018G069800.1 pacid=42800937 polypeptide=Potri.018G069800.1.p locus=Potri.018G069800 ID=Potri.018G069800.1.v4.1 annot-version=v4.1
ATGTCCAAGAAGCGAGGTCTTTCTTTGGAAGAGAAGCGCGAGAAGATTCTTCAGATCTTTTATGATTCACAAGACTTTTTCCTCCTAAAGGAACTTGAGA
AATTGGGCCCCAAGAAAGGTGTGATTAGCCAGTCCGTGAAAGATGTTGTCCAGAGTTTAGTGGATGATGACCTTGCTTCCAAAGACAAGATCGGGACTTC
TGTCTACTTCTGGAGTCTTCCTAGCTGTGCTGGAAATCAGATGAGGACTGTGTGCCGCAAACTTGATTCTGATTTACAAAGCAGTAAGAAGCGGCATGCA
GAACTTGTTGATCAGTGTGATGCATTAAAGAAAGGACGCGAGGAATCTGATGAACGAGAAGAGGCTTTGGCTGAGCTGAAAACCATTGAAATGAAGTATA
ACGAACTGAAGGAGGAGATGGAGAAGTATGCAGACAATGATCCTGCTGCCGTTCAAGCAATGAAGGAAGCTATTGAAGTTGCCCATGTGGCAGCAAATAG
ATGGACAGATAACATTTTCACATTGCGACAATGGTGTTCAAACAATTTCCCTCAGGCCAAGGAGCAGCTTGAAAATATGTATCAGGAGGCAGGAATAACA
GATGAATTTGACTATTTGGAGCCTCTACCAGTTATTTCAGTCGACGCCGTTCCTGATCAGATGCTGGAAGGCGCCCCTTGA
AA sequence
>Potri.018G069800.1 pacid=42800937 polypeptide=Potri.018G069800.1.p locus=Potri.018G069800 ID=Potri.018G069800.1.v4.1 annot-version=v4.1
MSKKRGLSLEEKREKILQIFYDSQDFFLLKELEKLGPKKGVISQSVKDVVQSLVDDDLASKDKIGTSVYFWSLPSCAGNQMRTVCRKLDSDLQSSKKRHA
ELVDQCDALKKGREESDEREEALAELKTIEMKYNELKEEMEKYADNDPAAVQAMKEAIEVAHVAANRWTDNIFTLRQWCSNNFPQAKEQLENMYQEAGIT
DEFDYLEPLPVISVDAVPDQMLEGAP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G29170 ATMND1 Mnd1 family protein (.1.2) Potri.018G069800
[exp]
0 1
AT3G62840 Small nuclear ribonucleoprotei... Potri.002G204300
[exp]
1.41 0.8004
AT2G38550 Transmembrane proteins 14C (.1... Potri.016G137200
[exp]
6.70 0.7729
AT3G02820 zinc knuckle (CCHC-type) famil... Potri.010G097400
[exp]
10.09 0.7330
AT1G04190 TPR3 tetratricopeptide repeat 3, Te... Potri.010G082900
[exp]
10.58 0.7505
AT1G80670 RAE1 RNA export factor 1, Transduci... Potri.001G048100
[exp]
13.41 0.7604
AT2G34480 Ribosomal protein L18ae/LX fam... Potri.004G063300
[exp]
15.00 0.7388 RPL18.6
AT5G11810 unknown protein Potri.006G230000
[exp]
18.11 0.6957
AT4G17760 damaged DNA binding;exodeoxyri... Potri.001G139100
[exp]
18.16 0.7825
AT3G23940 dehydratase family (.1.2) Potri.001G051700
[exp]
18.52 0.6910
AT5G60340 P-loop containing nucleoside t... Potri.012G109400
[exp]
19.44 0.7510

Potri.018G069800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.