Plant FIBer expression Database

Potri.018G069900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G29160 221 / 3e-73 SNF7.1 SNF7 family protein (.1.2.3)
AT2G19830 214 / 9e-71 VPS32, SNF7.2 SNF7 family protein (.1)
AT5G09260 50 / 3e-07 VPS20.2 vacuolar protein sorting-associated protein 20.2 (.1)
AT5G63880 47 / 2e-06 VPS20.1 SNF7 family protein (.1.2)
AT3G10640 45 / 9e-06 VPS60.1 SNF7 family protein (.1.2)
AT5G04850 45 / 1e-05 VPS60.2 SNF7 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G154000
[exp]
216 / 1e-71 AT4G29160 224 / 3e-74 SNF7 family protein (.1.2.3)
Potri.007G101500
[exp]
50 / 3e-07 AT5G09260 255 / 1e-86 vacuolar protein sorting-associated protein 20.2 (.1)
Potri.005G067700
[exp]
50 / 3e-07 AT5G09260 248 / 7e-84 vacuolar protein sorting-associated protein 20.2 (.1)
Potri.008G018300
[exp]
49 / 7e-07 AT3G10640 404 / 5e-145 SNF7 family protein (.1.2)
Potri.010G242700
[exp]
45 / 9e-06 AT3G10640 405 / 1e-145 SNF7 family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012921
[exp]
224 / 2e-74 AT2G19830 318 / 1e-111 SNF7 family protein (.1)
Lus10032705
[exp]
222 / 2e-73 AT2G19830 321 / 1e-112 SNF7 family protein (.1)
Lus10043454
[exp]
48 / 1e-06 AT5G04850 383 / 6e-136 SNF7 family protein (.1.2)
Lus10034131
[exp]
48 / 1e-06 AT5G04850 374 / 3e-133 SNF7 family protein (.1.2)
Lus10028867
[exp]
48 / 2e-06 AT5G04850 399 / 7e-139 SNF7 family protein (.1.2)
Lus10008953
[exp]
47 / 4e-06 AT5G04850 404 / 9e-145 SNF7 family protein (.1.2)
Lus10037699
[exp]
45 / 9e-06 AT5G09260 340 / 3e-120 vacuolar protein sorting-associated protein 20.2 (.1)
Lus10015693
[exp]
44 / 2e-05 AT5G09260 333 / 2e-117 vacuolar protein sorting-associated protein 20.2 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0235 PspA PF03357 Snf7 Snf7
Representative CDS sequence
>Potri.018G069900.4 pacid=42801455 polypeptide=Potri.018G069900.4.p locus=Potri.018G069900 ID=Potri.018G069900.4.v4.1 annot-version=v4.1
ATGTTTAACCGCTTATTTGGAAAACCTAAGCTGGAATCCAGTGCCCTTACTTCGTTAGACAAATTAAACGAGACACTTGAAATGCTCGAGAAAAAGGAGA
AGGTTCTAGTTAAAAAGGCAGCGGCCGAAGTTGAAAAGGCTAAGGAATTCACTAGAGGGAAGAACAAAAGGGCTGCAATTCAATGTTTGAAGAGGAAGAG
GCTGTATGAGCAGCAAATAGAACAACTTGGAAACTTTCAATTACGTATTCATGATCAGATGATAATGCTAGAAGGTGCAAAAGCTACTACTGAAACTGTA
GATGCATTAAGAACTGGTGCATCTGCTATGAAGGCGATGCAGAAAGCAACGAATATTGATGATGTGGACAAGACAATGGATGAGATCAATGAGCAGACAG
AGAACATGAAACAGATTCAAGAAGCATTATCAACCCCCATTGGTTCTGCAGCTGATTTTGATGAGGATGAATTGGAGGCAGAACTTGAAGAACTGGAAGG
AGCTGAATTGGAAGAACAGCTTCTTCAGCCAGCAACAACAGCTCCAGCGGCTCCAGTGCACGTCCCAGCTGGCAAGAAACCAGCTCCTAAAAAACGCACA
GCTGAGGAAGAAGAACTTGCTGACTTGCAAGCTGAGATGGCACTCTGA
AA sequence
>Potri.018G069900.4 pacid=42801455 polypeptide=Potri.018G069900.4.p locus=Potri.018G069900 ID=Potri.018G069900.4.v4.1 annot-version=v4.1
MFNRLFGKPKLESSALTSLDKLNETLEMLEKKEKVLVKKAAAEVEKAKEFTRGKNKRAAIQCLKRKRLYEQQIEQLGNFQLRIHDQMIMLEGAKATTETV
DALRTGASAMKAMQKATNIDDVDKTMDEINEQTENMKQIQEALSTPIGSAADFDEDELEAELEELEGAELEEQLLQPATTAPAAPVHVPAGKKPAPKKRT
AEEEELADLQAEMAL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G29160 SNF7.1 SNF7 family protein (.1.2.3) Potri.018G069900
[exp]
0 1
AT4G35860 ATGB2, AtRABB1b... GTP-binding 2 (.1.2) Potri.009G159600
[exp]
1.00 0.8072 Pt-ATGB2.1
AT3G59600 NRPE8B, NRPD8B,... RNA polymerase Rpb8 (.1) Potri.013G120500
[exp]
1.41 0.7904 Pt-ATRPABC16.2
AT1G25682 Family of unknown function (DU... Potri.008G115700
[exp]
2.23 0.7526
AT5G02570 Histone superfamily protein (.... Potri.009G028001
[exp]
3.74 0.7441
AT3G10640 VPS60.1 SNF7 family protein (.1.2) Potri.008G018300
[exp]
4.24 0.7444
AT3G48890 MSBP2, ATMP2, A... MEMBRANE STEROID BINDING PROTE... Potri.015G139800
[exp]
4.24 0.7168 MP2.3
AT2G02040 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDO... Potri.010G100200
[exp]
5.47 0.7363 NTR1.3
AT5G25760 PEX4, UBC21 ubiquitin-conjugating enzyme 2... Potri.006G240900
[exp]
5.47 0.7248
AT5G40670 PQ-loop repeat family protein ... Potri.017G070300
[exp]
5.74 0.7344
AT4G00355 ATI2 ATG8-interacting protein 2, un... Potri.014G086000
[exp]
6.00 0.7378

Potri.018G069900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.