Plant FIBer expression Database

Potri.018G070200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G72550 939 / 0 tRNA synthetase beta subunit family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G068100
[exp]
1129 / 0 AT1G72550 930 / 0.0 tRNA synthetase beta subunit family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10020531
[exp]
960 / 0 AT1G72550 878 / 0.0 tRNA synthetase beta subunit family protein (.1.2)
Lus10009382
[exp]
913 / 0 AT1G72550 832 / 0.0 tRNA synthetase beta subunit family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0383 PheT-TilS PF03483 B3_4 B3/4 domain
CL0123 HTH PF03484 B5 tRNA synthetase B5 domain
Representative CDS sequence
>Potri.018G070200.3 pacid=42801659 polypeptide=Potri.018G070200.3.p locus=Potri.018G070200 ID=Potri.018G070200.3.v4.1 annot-version=v4.1
ATGCCGACCGTTAGCGTGGGGAGAGATCGTTTGTTCGCAGCCCTAGGGAAATCTTACACACAAGAAGAGTTTGAGGATTTGTGCTTCAAGTTCGGTATCG
AGCTCGACGATGTGACTACTGAGAAAGCAATTATTAGAAAAGAGAGGCACTTGGATGAAGAGGATGAAGAAGTAGGTGATGATGAAGAAATCATTTACAA
AATTGAAGTTCCTGCTAACAGATATGATTTGCTATGCCTTGAGGGGATCGCTCAAGCCCTCCGCATTTTTAACGAGGAGGAGCAGACGCCCACATATACA
CTTGCCAACATTACACAAGACTCAATGCTTAAGATGCATGTCCAACCAGAGACATCCTTGATTCGTCCCTTTGTGGTTTGTGCTGTTCTGAGAGATATTA
CATTTGATGAAGCAAGTTACAATAGCTTCATTGATCTCCAAGATAAGCTTCATCAAAACATTTGTAGGCGGAGAACCCTAGTTGCAATTGGGACTCACGA
CTTGGATACATTACAAGGCCCTTTCACTTATGAGGCTTTGCATCCTGAAAACATAAATTTTGTACCACTGAAACAGGAGAAAAACTTCAGAGCTGATGAG
CTGATGGAGTTTTACAAGTCTGATATGAAGCTGAAGAAGTTCTTACACATAATTGAGAATTCACCAGTGTATCCCATCATATATGATTCTAAAAGAACTG
TTTTATCTCTACCACCAATTATTAATGGTGCACATTCAGCTATCACTCTGAAGACTAAGAATGTTTTCATTGAATGCACAGCCACTGATCTGACAAAGGC
CAGTATTGTTTTGAACACAATGGTAACAACTTTTTCAGCATATTGTCAAAGAAAATTTGAGGTGGAACCCGTTAAAGTGATATATTCTGATGGAAAGTCA
TACGTCTACCCTGATTTATCTGTCTATAACATGGAAGTTCCTCTTTCATATATCACTGGCTCAATTGGAGTCTCTTTGGCGGCTGAAAAGGTCACTAGTT
TATTAAATCGGATGCAATTGCGTGCTGAACATTCCGTATTTGATGACAACAAATGCAATATCAATGTATTAATACCTCCAACAAGAAGTGATGTTCTTCA
CCCTTGTGATGTTATGGAGGATGTTGCAATTGCATATGGGTATAATGACATTCCGAAGAGAAGGCTGCCATCCATGAAGCCACTGCCCCTGAATCAGCTT
GAGGATCTTATCAGAGCAGAGATTGCAATGAATGGGTTTACAGAGGTCTTAACATGGATTTTATGCTCTTATCGAGAGAATTTTGCCTCATTAAATCGAG
AAGATGATCAATCAAGTGCAGTGATTATTGGAAATCCCCGTTCCTCGGATTTTGAGGTTGTCCGAACCAGCCTCATGCCTGGTGCTTTGAAAATTATCGG
ACATAACAAAGACCATCCTAAGCCAATCAAGATTTTTGAAGTGGGTGACATAGCCCTATTGGATGAGAGTAAAGATGTTGGTGCAACAAACCGTCGCCAT
CTCGCAGCTTTGTATTGTGGCACAAACTCAGGATTTGAGCTTATTCACTCTTTGGTGGACAGAATCATGGAAGTGATGGGAACCCCTTTCGTCCCGATTG
GTGACAATACAGGTTACTACATAGAGCGGTCAAATGAACCTGAATTTCTTCCGGGTAGACAAGCTAGCATCATTTACAAAGGGAAGCATTTTGGCAATTT
TGGTATTGTGCACCCCCAGGTCTTGAACAACTTCGTCATTACTGATCCATGTTCCTTCTTGGAAATCGACATTGAGCATTTCTTGTAA
AA sequence
>Potri.018G070200.3 pacid=42801659 polypeptide=Potri.018G070200.3.p locus=Potri.018G070200 ID=Potri.018G070200.3.v4.1 annot-version=v4.1
MPTVSVGRDRLFAALGKSYTQEEFEDLCFKFGIELDDVTTEKAIIRKERHLDEEDEEVGDDEEIIYKIEVPANRYDLLCLEGIAQALRIFNEEEQTPTYT
LANITQDSMLKMHVQPETSLIRPFVVCAVLRDITFDEASYNSFIDLQDKLHQNICRRRTLVAIGTHDLDTLQGPFTYEALHPENINFVPLKQEKNFRADE
LMEFYKSDMKLKKFLHIIENSPVYPIIYDSKRTVLSLPPIINGAHSAITLKTKNVFIECTATDLTKASIVLNTMVTTFSAYCQRKFEVEPVKVIYSDGKS
YVYPDLSVYNMEVPLSYITGSIGVSLAAEKVTSLLNRMQLRAEHSVFDDNKCNINVLIPPTRSDVLHPCDVMEDVAIAYGYNDIPKRRLPSMKPLPLNQL
EDLIRAEIAMNGFTEVLTWILCSYRENFASLNREDDQSSAVIIGNPRSSDFEVVRTSLMPGALKIIGHNKDHPKPIKIFEVGDIALLDESKDVGATNRRH
LAALYCGTNSGFELIHSLVDRIMEVMGTPFVPIGDNTGYYIERSNEPEFLPGRQASIIYKGKHFGNFGIVHPQVLNNFVITDPCSFLEIDIEHFL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G72550 tRNA synthetase beta subunit f... Potri.018G070200
[exp]
0 1
AT1G04170 EIF2 GAMMA, EIF... eukaryotic translation initiat... Potri.001G129100
[exp]
2.64 0.8884 EIF2.5
AT5G39740 OLI7, RPL5B OLIGOCELLULA 7, ribosomal prot... Potri.014G197100
[exp]
15.36 0.8463
AT5G07090 Ribosomal protein S4 (RPS4A) f... Potri.015G079600
[exp]
22.97 0.8476
AT3G03060 P-loop containing nucleoside t... Potri.001G458200
[exp]
27.96 0.7870
AT5G37350 Serine/threonine-protein kinas... Potri.015G096100
[exp]
33.22 0.7480
AT3G62870 Ribosomal protein L7Ae/L30e/S1... Potri.004G113800
[exp]
34.29 0.8150 RPL7.5
AT5G52470 ATFIB1, ATFBR1,... SKP1/ASK1-INTERACTING PROTEIN,... Potri.015G147500
[exp]
34.77 0.8009
AT5G62050 ATOXA1, OXA1AT,... HOMOLOG OF YEAST OXIDASE ASSEM... Potri.001G091800
[exp]
35.32 0.7655 OXA1.2
AT3G20000 TOM40 translocase of the outer mitoc... Potri.014G004100
[exp]
36.46 0.8367
AT1G56070 LOS1, AT1G56075... LOW EXPRESSION OF OSMOTICALLY ... Potri.007G065700
[exp]
39.79 0.7771 LOS1.1

Potri.018G070200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.