Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26220 325 / 9e-114 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G34050 263 / 1e-88 CCoAOMT1 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G67980 242 / 7e-81 CCOAMT caffeoyl-CoA 3-O-methyltransferase (.1.2) AT1G24735 232 / 9e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G67990 221 / 1e-72 ATTSM1 TAPETUM-SPECIFIC METHYLTRANSFERASE 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G62000 149 / 8e-44 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT3G61990 145 / 1e-42 OMTF3 O-MTase family 3 protein, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G304800 [exp] 264 / 2e-89 AT4G34050 455 / 1e-164 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.009G099800 [exp] 264 / 2e-89 AT4G34050 465 / 2e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.008G136600 [exp] 248 / 4e-83 AT1G67980 337 / 1e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.010G104400 [exp] 240 / 3e-80 AT1G67980 335 / 6e-118 caffeoyl-CoA 3-O-methyltransferase (.1.2) Potri.002G183600 [exp] 135 / 1e-38 AT3G62000 404 / 3e-143 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012913 [exp] 275 / 2e-93 AT4G26220 277 / 1e-94 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10014074 [exp] 263 / 5e-89 AT4G34050 465 / 1e-168 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10019841 [exp] 263 / 9e-89 AT4G34050 466 / 8e-169 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10027888 [exp] 256 / 3e-86 AT4G34050 461 / 9e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10002837 [exp] 256 / 3e-86 AT4G34050 462 / 2e-167 caffeoyl coenzyme A O-methyltransferase 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10009484 [exp] 252 / 2e-82 AT4G26220 255 / 1e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10034584 [exp] 220 / 4e-72 AT1G67980 299 / 2e-103 caffeoyl-CoA 3-O-methyltransferase (.1.2) Lus10036339 [exp] 152 / 8e-45 AT3G62000 385 / 9e-136 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10021804 [exp] 140 / 1e-41 AT1G24735 233 / 3e-78 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10010276 [exp] 112 / 9e-30 AT3G62000 269 / 1e-90 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13578 [poplar] [flax] Methyltransf_24 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.018G070300.1 pacid=42800541 polypeptide=Potri.018G070300.1.p locus=Potri.018G070300 ID=Potri.018G070300.1.v4.1 annot-version=v4.1 ATGGACTCAAAAAAAGCAATTTCTTTTTCAAAGGGGTTATTGCAGAGTGAAGAATTATATCAGTATGTCCTGGAGACCAGCGTGTATCCACGTGAACTAG AGCCTCTCAGAGAGCTAAGGATGCTTACTGCAACCCACCCAAGGGCCATGATGGCTACTGCACCAGATGCTGGTCAGTTGATGGCAATGCTCTTGAAGCT AGTAAATGCACAAAAAACAATTGAAGTGGGAGTTTTCACCGGGTACTCCCTTCTCCTCACTGCTCTTTCAATTCCTAAGGATGGAAAGATTACAGCCATA GATGTGAATCGCGAGGCTTATGAAATAGGATTACCAATTATAAGAAATGCTGGTGTTGAACACAAAATTAACTTCATAGAATCAGAAGCTCAACCGATTC TTGACAAGCTATTAGAAGATCATGGAAATGAAGGCAGTTTTGATTTTGCTTTTGTTGATGCTGACAAAGTCAATTACTGGAACTACCACGAGAGGCTAAT GAAATTGTTAAAGGTGGGGGGAATAGTTGTCTATGACAACACACTATGGGGAGGGACAGTTGCTTTGTCAGAAGAGTCTACTCCAGAGAATATGAAAGCA GGCAGGCAACTTACAATTGAATTTAACAAATTGCTTGCAGCTGACTCCCGCGTCCAAATCTCACATGCTCCATCGGGTGATGGGATCACAATTTGCAGGC GAATCTACTGA
AA sequence Show only first row Show all	>Potri.018G070300.1 pacid=42800541 polypeptide=Potri.018G070300.1.p locus=Potri.018G070300 ID=Potri.018G070300.1.v4.1 annot-version=v4.1 MDSKKAISFSKGLLQSEELYQYVLETSVYPRELEPLRELRMLTATHPRAMMATAPDAGQLMAMLLKLVNAQKTIEVGVFTGYSLLLTALSIPKDGKITAI DVNREAYEIGLPIIRNAGVEHKINFIESEAQPILDKLLEDHGNEGSFDFAFVDADKVNYWNYHERLMKLLKVGGIVVYDNTLWGGTVALSEESTPENMKA GRQLTIEFNKLLAADSRVQISHAPSGDGITICRRIY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G26220			S-adenosyl-L-methionine-depend...		Potri.018G070300 [exp]	0	1
AT4G39280			phenylalanyl-tRNA synthetase, ...		Potri.009G116100 [exp]	1.00	0.8657
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.005G143800 [exp]	15.55	0.7379	CYP81S7,CYP81.2
AT4G14320			Zinc-binding ribosomal protein...		Potri.010G251500 [exp]	19.62	0.7236
AT3G15160			unknown protein		Potri.011G135800 [exp]	22.44	0.7237
AT4G26965			NADH:ubiquinone oxidoreductase...		Potri.001G109600 [exp]	27.74	0.7052
AT5G65650			Protein of unknown function (D...		Potri.005G125000 [exp]	28.28	0.6609
AT3G13580			Ribosomal protein L30/L7 famil...		Potri.008G008000 [exp]	33.94	0.6966	RPL7.3
AT3G48140			B12D protein (.1)		Potri.010G055300 [exp]	62.92	0.6856
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.005G126500 [exp]	68.49	0.6651
AT1G16020			Protein of unknown function (D...		Potri.008G137000 [exp]	74.07	0.6860

Compare expression of checked genes

Potri.018G070300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.