Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20060 398 / 6e-142 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G52700 348 / 3e-122 alpha/beta-Hydrolases superfamily protein (.1) AT3G15650 346 / 6e-121 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G52695 162 / 1e-49 alpha/beta-Hydrolases superfamily protein (.1) AT1G51300 122 / 6e-34 alpha/beta-Hydrolases superfamily protein (.1) AT1G52460 122 / 1e-33 alpha/beta-Hydrolases superfamily protein (.1) AT1G52470 121 / 2e-33 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT1G47786 117 / 1e-32 alpha/beta-Hydrolases superfamily protein (.1) AT1G47780 88 / 6e-22 alpha/beta-Hydrolases superfamily protein (.1) AT4G22300 90 / 2e-21 SOBER1 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G030200 [exp] 399 / 3e-142 AT5G20060 373 / 4e-132 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.006G251100 [exp] 396 / 3e-141 AT5G20060 370 / 7e-131 alpha/beta-Hydrolases superfamily protein (.1.2.3) Potri.001G173700 [exp] 375 / 9e-133 AT3G15650 389 / 7e-138 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G060300 [exp] 369 / 4e-130 AT1G52700 382 / 1e-135 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G023000 [exp] 89 / 4e-21 AT4G22300 357 / 1e-125 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1) Potri.004G001701 [exp] 41 / 0.0002 AT4G22300 199 / 9e-65 SUPPRESSOR OF AVRBST-ELICITED RESISTANCE 1, carboxylesterases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019438 [exp] 405 / 2e-144 AT5G20060 387 / 1e-137 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10043294 [exp] 403 / 4e-143 AT5G20060 385 / 3e-136 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10008078 [exp] 376 / 3e-133 AT5G20060 362 / 4e-128 alpha/beta-Hydrolases superfamily protein (.1.2.3) Lus10026054 [exp] 308 / 4e-106 AT1G52700 337 / 2e-117 alpha/beta-Hydrolases superfamily protein (.1) Lus10014347 [exp] 303 / 3e-104 AT1G52700 328 / 3e-114 alpha/beta-Hydrolases superfamily protein (.1) Lus10002034 [exp] 184 / 3e-56 AT3G15650 239 / 1e-77 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.018G070700.1 pacid=42801401 polypeptide=Potri.018G070700.1.p locus=Potri.018G070700 ID=Potri.018G070700.1.v4.1 annot-version=v4.1 ATGAGTTTTGCTGGTCCTTCCCTGGCTTCTGGTGGTAAAACTGTTAGAAGAGCTATAGAATTCGGAAGGACTTATGTGGTTAAGCCCAAAGGTAAACACC TTGCCACTGTTGTTTGGCTACATGGGCTTGGCGATAATGGCTCAAGCTGGTCACAGCTCTTGGAGACTCTTCCTCTTCCAAATATTAAATGGATATGCCC AACTGCACCGACTCAACCTGTAACTGTATTCGGGGGTTTCCCATCAACAGCTTGGTTTGATGTGGGAGACCTTTCAGAAGATGCTCCTGATGATACAGAG GGTCTGGATGCTGCAGCAGCACATGTGGCAAATTTGCTGTCAACAGAGCCCTTTGACATTAGACTTGGAATTGGAGGCTTCAGCATGGGTGCTGCAACTG CTATGTATTCTGCTACCTGCTTTGCTGCTGGAAAGTACTCAGATGGCAGTGCATACCCTGCCAATTTGAGTGCAATTGTTGGATTAAGTGGCTGGCTTCC ATGTTCAAAGACCCTGAGTAAGAAAATAGGAGGGGATGAAACCGCAAGGCGTGCTGCTTCCTTGCCTATATTGCTCTGTCATGGCAAAGGTGATGATGTG GTTCCTTACAAATTTGGTGAAAAATCCTCACGGGTTTTGGTTTCAACTGGATTTCAGGATGCAACATTCAAAGCATACAATGGGCTTGGTCACTACACAA TCCCTGAAGAGATGGATGAGGTTTGTGCTTGGCTTACTTCTAAGTTGGGGCTTGGAGGGCGTTCTCCATGA
AA sequence Show only first row Show all	>Potri.018G070700.1 pacid=42801401 polypeptide=Potri.018G070700.1.p locus=Potri.018G070700 ID=Potri.018G070700.1.v4.1 annot-version=v4.1 MSFAGPSLASGGKTVRRAIEFGRTYVVKPKGKHLATVVWLHGLGDNGSSWSQLLETLPLPNIKWICPTAPTQPVTVFGGFPSTAWFDVGDLSEDAPDDTE GLDAAAAHVANLLSTEPFDIRLGIGGFSMGAATAMYSATCFAAGKYSDGSAYPANLSAIVGLSGWLPCSKTLSKKIGGDETARRAASLPILLCHGKGDDV VPYKFGEKSSRVLVSTGFQDATFKAYNGLGHYTIPEEMDEVCAWLTSKLGLGGRSP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20060			alpha/beta-Hydrolases superfam...		Potri.018G070700 [exp]	0	1
AT5G42770			Maf-like protein (.1.2)		Potri.014G196400 [exp]	1.41	0.9184
AT1G77090			Mog1/PsbP/DUF1795-like photosy...		Potri.002G072400 [exp]	4.24	0.9067
AT5G20130			unknown protein		Potri.016G013500 [exp]	4.47	0.8923
AT4G09830			Uncharacterised conserved prot...		Potri.001G003400 [exp]	6.70	0.8634
AT5G59400			unknown protein		Potri.001G241400 [exp]	7.34	0.8715
AT2G22540	MADS	AGL22, SVP	SHORT VEGETATIVE PHASE, AGAMOU...		Potri.002G105600 [exp]	7.68	0.8267
AT1G11930			Predicted pyridoxal phosphate-...		Potri.004G006600 [exp]	11.22	0.9066
AT1G04290			Thioesterase superfamily prote...		Potri.004G134132 [exp]	11.40	0.8248
AT5G53280		PDV1	plastid division1 (.1)		Potri.015G022900 [exp]	11.40	0.8655
AT2G43940		ATHOL3, HOL3	HARMLESS TO OZONE LAYER 3, S-a...		Potri.017G007000 [exp]	13.03	0.8412

Compare expression of checked genes

Potri.018G070700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.