Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20050 517 / 0 Protein kinase superfamily protein (.1) AT4G32300 338 / 5e-108 SD2-5 S-domain-2 5 (.1) AT5G24080 289 / 7e-93 Protein kinase superfamily protein (.1) AT1G34300 293 / 5e-91 lectin protein kinase family protein (.1) AT2G19130 285 / 5e-88 S-locus lectin protein kinase family protein (.1) AT4G00340 266 / 1e-80 RLK4 receptor-like protein kinase 4 (.1) AT5G35370 262 / 6e-79 S-locus lectin protein kinase family protein (.1) AT3G24540 220 / 6e-66 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT1G70250 222 / 2e-64 receptor serine/threonine kinase, putative (.1) AT3G24550 219 / 2e-64 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G027300 [exp] 324 / 1e-102 AT4G32300 1012 / 0.0 S-domain-2 5 (.1) Potri.006G254600 [exp] 321 / 2e-101 AT4G32300 965 / 0.0 S-domain-2 5 (.1) Potri.015G026300 [exp] 308 / 4e-96 AT5G24080 684 / 0.0 Protein kinase superfamily protein (.1) Potri.019G086200 [exp] 298 / 1e-92 AT1G34300 918 / 0.0 lectin protein kinase family protein (.1) Potri.013G115700 [exp] 297 / 2e-92 AT1G34300 939 / 0.0 lectin protein kinase family protein (.1) Potri.019G086400 [exp] 295 / 1e-91 AT1G34300 904 / 0.0 lectin protein kinase family protein (.1) Potri.019G086300 [exp] 292 / 1e-90 AT1G34300 847 / 0.0 lectin protein kinase family protein (.1) Potri.014G086900 [exp] 292 / 2e-90 AT4G00340 862 / 0.0 receptor-like protein kinase 4 (.1) Potri.013G115800 [exp] 289 / 2e-89 AT1G34300 858 / 0.0 lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033032 [exp] 606 / 0 AT5G20050 483 / 4e-169 Protein kinase superfamily protein (.1) Lus10013659 [exp] 329 / 7e-112 AT5G20050 244 / 8e-79 Protein kinase superfamily protein (.1) Lus10002917 [exp] 337 / 2e-107 AT4G32300 950 / 0.0 S-domain-2 5 (.1) Lus10000249 [exp] 333 / 6e-106 AT4G32300 949 / 0.0 S-domain-2 5 (.1) Lus10043391 [exp] 296 / 4e-92 AT4G32300 795 / 0.0 S-domain-2 5 (.1) Lus10028711 [exp] 290 / 6e-92 AT1G34300 704 / 0.0 lectin protein kinase family protein (.1) Lus10039315 [exp] 296 / 9e-92 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1) Lus10006052 [exp] 289 / 3e-89 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1) Lus10033748 [exp] 278 / 1e-85 AT2G19130 711 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10042266 [exp] 270 / 2e-82 AT2G19130 775 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.018G070800.2 pacid=42801334 polypeptide=Potri.018G070800.2.p locus=Potri.018G070800 ID=Potri.018G070800.2.v4.1 annot-version=v4.1 ATGGAGGACAAGAAAGCAAATATAATGGCAGTTTCAACCATTATTGTCCTGTCCATCTTTATCATCGTTGCTCGTGTATCACTAAAACTTTCCAAGCCTT TTTTCCTCATTGCAGGGGCAAGTGGTTCAGTGATCCTTGCAGTCTTTGCACATCTTATTATCAGAAGACGATACAAACATAGCAGAAAGTTGTTAGAGAG TCAATTGGTTTCTCAAGGCATAGAGCTTCGGATTGAATACAGTTTTCTTAGAAAAGTTGCAGGTGTTCCTACGAAGTTTCGATACAAGGAGCTTGAGGAA GCAACTGACAATTTTCAGGCATTGCTTGGCCAAGGATCATCAGCTTCAGTCTTCAAAGGTATCCTGAATGATGGAACATCTGTTGCTGTGAAGCGGATTG AAGGAGAGAAGCATGGAGAGAAGGAATTTCGAGCGGAGGTTTCAGCAATCGCTAGTGTGCAACATGTGCATCTCTTGCGCCTTCTTGGATATTGTATAAT TGCCGGAGGGCCTCGTTTCCTCGTTTATGAGTTTATCTCCAATGGATCATTGGATTGTTGGATTTTCCAAGGAAGAGCAAACCGGAACCAATTACCAGGA GGGTGTTTATCATGGGGCTTAAGGTATAGAGTTGCCATTGATGTCGCCAAGGCGCTTTGTTACCTTCATAATGATTGTCGATCAAGGATCTTGCACCTAG ATATCAAGCCGGAAAATATACTTCTGGATGAGAATTATCGAGCAATTGTGGCAGATTTTGGCCTTTCCAAGTTAATGGGACGAGATGAGAGTAAAGTTAT CACTAATATCAGAGGGACTAGAGGTTACTTGGCTCCAGAATGGCTCTTGGAGCACGGTATTTCTGCAAAATCTGACGTCTACAGTTATGGGATGGTGGTT TTGGAGATGATTGGAGGTCGGAGAAATGTTTGCTTGGTGCAAAATGGCAATGATAAATCTCAAAGGAAATGGCAGTACTTCCCAAAAATAGTCAATCAGA AAATGAGAGAAGGAAAGCTTATGGAAGTGGTTGATAATAGGCTAACAGAAAGTGGAGGTATTGATGAGAGGGAGGTAAGGAGATTGGTATTTGTAGCTTT CTGGTGCATACAAGAGAGGGCTCAGCTTAGACCTAGCATGGGTCAAGTCGTTGAGATGCTTGAAGGCCATGTACCTGTAGAGGAGCCCCCTGATACCCAA ATGATCATTGTTGATTTGTTGGCCATTGATGAAGAGTTACCTGATGCACATAACATGGCTCCCATGGCTGCAATTCAAACACAACCAATAGACAACAACC TTCCTACCACATCAACTTACTCGTTAGATATGTCAGTTCTTTCTGCACGATAG
AA sequence Show only first row Show all	>Potri.018G070800.2 pacid=42801334 polypeptide=Potri.018G070800.2.p locus=Potri.018G070800 ID=Potri.018G070800.2.v4.1 annot-version=v4.1 MEDKKANIMAVSTIIVLSIFIIVARVSLKLSKPFFLIAGASGSVILAVFAHLIIRRRYKHSRKLLESQLVSQGIELRIEYSFLRKVAGVPTKFRYKELEE ATDNFQALLGQGSSASVFKGILNDGTSVAVKRIEGEKHGEKEFRAEVSAIASVQHVHLLRLLGYCIIAGGPRFLVYEFISNGSLDCWIFQGRANRNQLPG GCLSWGLRYRVAIDVAKALCYLHNDCRSRILHLDIKPENILLDENYRAIVADFGLSKLMGRDESKVITNIRGTRGYLAPEWLLEHGISAKSDVYSYGMVV LEMIGGRRNVCLVQNGNDKSQRKWQYFPKIVNQKMREGKLMEVVDNRLTESGGIDEREVRRLVFVAFWCIQERAQLRPSMGQVVEMLEGHVPVEEPPDTQ MIIVDLLAIDEELPDAHNMAPMAAIQTQPIDNNLPTTSTYSLDMSVLSAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20050			Protein kinase superfamily pro...		Potri.018G070800 [exp]	0	1
AT1G49570			Peroxidase superfamily protein...		Potri.009G106400 [exp]	2.64	0.9634
AT3G09220		LAC7	laccase 7 (.1)		Potri.016G106300 [exp]	5.47	0.9505
AT1G06840			Leucine-rich repeat protein ki...		Potri.016G140101 [exp]	7.34	0.9453
AT2G38300	GARP		myb-like HTH transcriptional r...		Potri.001G280000 [exp]	8.12	0.9517
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Potri.012G048900 [exp]	11.83	0.9466
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Potri.006G058800 [exp]	12.72	0.9380
AT1G49000			unknown protein		Potri.010G130600 [exp]	14.14	0.9503
AT2G03360			Glycosyltransferase family 61 ...		Potri.010G162100 [exp]	14.24	0.9402
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.001G216100 [exp]	18.49	0.9331
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G071600 [exp]	20.73	0.9376

Compare expression of checked genes

Potri.018G070800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.