Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26710 796 / 0 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT3G14620 412 / 2e-139 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14610 409 / 3e-138 CYP72A7 "cytochrome P450, family 72, subfamily A, polypeptide 7", cytochrome P450, family 72, subfamily A, polypeptide 7 (.1) AT1G75130 402 / 9e-136 CYP721A1 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) AT3G14660 402 / 1e-135 CYP72A13 "cytochrome P450, family 72, subfamily A, polypeptide 13", cytochrome P450, family 72, subfamily A, polypeptide 13 (.1) AT3G14690 397 / 1e-133 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT2G46950 397 / 1e-132 CYP709B2 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) AT3G14640 393 / 4e-132 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT3G14680 392 / 1e-131 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT3G14630 389 / 2e-130 CYP72A9 "cytochrome P450, family 72, subfamily A, polypeptide 9", cytochrome P450, family 72, subfamily A, polypeptide 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G154500 [exp] 939 / 0 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.002G134500 [exp] 436 / 4e-148 AT1G75130 540 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.011G098800 [exp] 434 / 8e-148 AT3G14690 640 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101500 [exp] 432 / 4e-147 AT3G14690 609 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099400 [exp] 431 / 2e-146 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G101401 [exp] 429 / 3e-146 AT3G14690 613 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.011G099800 [exp] 428 / 1e-145 AT3G14690 612 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Potri.002G263800 [exp] 427 / 4e-145 AT1G75130 493 / 2e-171 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Potri.005G035200 [exp] 423 / 7e-144 AT1G75130 547 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033044 [exp] 825 / 0 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10017771 [exp] 709 / 0 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10016310 [exp] 436 / 1e-148 AT1G75130 596 / 0.0 "cytochrome P450, family 721, subfamily A, polypeptide 1", cytochrome P450, family 721, subfamily A, polypeptide 1 (.1) Lus10042487 [exp] 415 / 2e-140 AT3G14690 604 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10036822 [exp] 417 / 7e-140 AT2G26710 410 / 4e-137 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10026178 [exp] 401 / 9e-135 AT3G14690 607 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10042486 [exp] 400 / 2e-134 AT3G14690 580 / 0.0 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) Lus10036820 [exp] 398 / 1e-133 AT2G26710 397 / 2e-133 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10025756 [exp] 392 / 2e-131 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10026085 [exp] 386 / 4e-129 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.018G070900.1 pacid=42801317 polypeptide=Potri.018G070900.1.p locus=Potri.018G070900 ID=Potri.018G070900.1.v4.1 annot-version=v4.1 ATGAAGGAGCTGTTCTTGTATTATTACTGGCTCATTAAGCTGCTTGCCATCTCCTTCTTGGCATTAGTTTTTTTGATAAAGATTGTAGTCTTGCTATGGT GTAGACCCCGAAGAATTGAACACCATTTTTCCAAGCAAGGAATCAGAGGACCCCCTTATCGTTTCTTCATTGGCAACGTGAAGGAGATTGTGGAAATGAT GTTAAAGGCCTCTTCTCAACCTATGCCTTTCTCTCACAACATACTCCCTAGAGTTCTCTCCTTTTACCATCACTGGAAGAAAATCTACGGTGCAACGTTT CTTGTGTGGTTCGGACCCACGGTTCGACTTACCGTCTCTGATCCAGATCTCATCCGAGAAATTTTTACATCCAAGTCGGAATTGTATGAGAAGGTCGAGG CTCACCCTCTTGTTAAGCAGCTTGAAGGTGATGGACTCCTAAGCCTCAAAGGAGAAAAATGGGCTCTCCATAGGAAAATCATAACACCCACATTCCACAT GGAAAATCTCAAGTTGCTAGTACCTGTGGTGGCAAAGAGCGTAAGCGATATGCTGGAGCAATGGTCGGCAATGACAAATTCTGACGAGGTGGAAATTGAA GTTTCCGAATGGTTCCAAACCCTAACAGAAGATGTCATTACGCGAACAGCATTTGGCAGCAGCTACGAAGATGGAAAGGCCATTTTTCAATTGCAAGCAC AGCAAATGGTCCTCGCTGCCGTGGCATTCCGACGAGTTCTAATCCCTGGTTACAGGTTCTTTCCGACAAGAAGGAACATTAATTCGTGGAGATTGGACAA AGAAATCAAGAAATCACTGATGAAGCTCATTGAAAGGAGAAGAGAGAAATCGAGCGTTAACAAAACGCATCAAGATAGCTGTCCTAAGGATTTGTTAGGA CTGATGATTCAGGCCTCAAATTCATGTACTGATGTAACCGTACACGACATTGTCGAAGAGTGCAAGAGCTTTTTTTTTGCGGGCCAGCACACCACATCAA ACTTGCTGACGTGGACAACGGTCCTACTAGCAATGCATCCACAGTGGCAGGCTCAAGCACGTGAGGAGGTCTTGAGGGTGTGTGGATCACGTGACACACC CACCAAGGATGATGTTGCAAAGCTTAAGACGCTGGCCATGATTTTAAATGAATCCTTACGGTTGTACCCACCAACAATCGCCACAATCAGACGGTCCAAG GCTGATGTAGAGCTGGGGGGCTACAAAGTCCCAAGTGGGACCGAGATCTTGATACCGATCCTGGCCCTTCATCATGATCAATCCATATGGGGCAATGACG CAAATGAATTCAATCCTGCTCGCTTCTCCGGTGGTGTGGCCCGCGCTGCTAAGCATCACGTGGCGTTCATTCCGTTTGGGCTCGGAGTCCGCACCTGCAT CGGTCAAAATCTAGCCATCTTGCAAGCCAAATTAACGCTTGCTATATTACTGCAACGATTCTCTTTCAGACTGGCCCCTAGCTATCAGCATGCACCAACA GTCCTCATGCTACTTTACCCCCAGTATGGCGCACCCATCATCTTCCAACATCTGTCAAATCCATGA
AA sequence Show only first row Show all	>Potri.018G070900.1 pacid=42801317 polypeptide=Potri.018G070900.1.p locus=Potri.018G070900 ID=Potri.018G070900.1.v4.1 annot-version=v4.1 MKELFLYYYWLIKLLAISFLALVFLIKIVVLLWCRPRRIEHHFSKQGIRGPPYRFFIGNVKEIVEMMLKASSQPMPFSHNILPRVLSFYHHWKKIYGATF LVWFGPTVRLTVSDPDLIREIFTSKSELYEKVEAHPLVKQLEGDGLLSLKGEKWALHRKIITPTFHMENLKLLVPVVAKSVSDMLEQWSAMTNSDEVEIE VSEWFQTLTEDVITRTAFGSSYEDGKAIFQLQAQQMVLAAVAFRRVLIPGYRFFPTRRNINSWRLDKEIKKSLMKLIERRREKSSVNKTHQDSCPKDLLG LMIQASNSCTDVTVHDIVEECKSFFFAGQHTTSNLLTWTTVLLAMHPQWQAQAREEVLRVCGSRDTPTKDDVAKLKTLAMILNESLRLYPPTIATIRRSK ADVELGGYKVPSGTEILIPILALHHDQSIWGNDANEFNPARFSGGVARAAKHHVAFIPFGLGVRTCIGQNLAILQAKLTLAILLQRFSFRLAPSYQHAPT VLMLLYPQYGAPIIFQHLSNP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.018G070900 [exp]	0	1
					Potri.007G114100 [exp]	1.00	0.9857
AT1G22430			GroES-like zinc-binding dehydr...		Potri.019G041500 [exp]	3.46	0.9744
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.006G089800 [exp]	4.00	0.9716
AT2G48130			Bifunctional inhibitor/lipid-t...		Potri.005G211900 [exp]	4.24	0.9745
AT2G24430	NAC	ANAC039, ANAC03...	Arabidopsis NAC domain contain...		Potri.018G003800 [exp]	5.47	0.9713
AT1G47340			F-box and associated interacti...		Potri.008G216000 [exp]	5.47	0.9599
AT5G49760			Leucine-rich repeat protein ki...		Potri.004G232500 [exp]	6.32	0.9664
AT1G74460			GDSL-like Lipase/Acylhydrolase...		Potri.012G068700 [exp]	6.70	0.9714
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.014G070800 [exp]	7.34	0.9670
AT2G37050			Leucine-rich repeat protein ki...		Potri.007G004700 [exp]	8.36	0.9709

Compare expression of checked genes

Potri.018G070900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.