Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04870 551 / 0 PRMT10, ATPRMT10 protein arginine methyltransferase 10 (.1.2) AT3G20020 222 / 2e-68 ATPRMT6 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) AT2G19670 186 / 3e-55 ATPRMT1A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1A, protein arginine methyltransferase 1A (.1) AT4G29510 185 / 7e-55 ATPRMT1B, ATPRMT11 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) AT3G06930 180 / 1e-51 ATPRMT4B ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4B, protein arginine methyltransferase 4B (.1.2) AT5G49020 178 / 9e-51 ATPRMT4A ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) AT3G12270 160 / 9e-44 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) AT4G31120 53 / 2e-07 PRMT5, SKB1 ,ATPRMT5 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G000300 [exp] 220 / 4e-68 AT3G20020 582 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.006G149400 [exp] 178 / 3e-52 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.008G222700 [exp] 181 / 4e-52 AT5G49020 762 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.010G014600 [exp] 179 / 5e-51 AT5G49020 764 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Potri.018G067200 [exp] 173 / 3e-50 AT4G29510 597 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Potri.001G030200 [exp] 157 / 9e-43 AT3G12270 674 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1) Potri.014G004000 [exp] 62 / 4e-11 AT3G20020 305 / 9e-104 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Potri.018G000500 [exp] 47 / 2e-05 AT4G31120 1063 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 5, SHK1 binding protein 1 (.1.2) Potri.003G076500 [exp] 44 / 0.0002 AT4G16570 877 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 7, protein arginine methyltransferase 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043295 [exp] 579 / 0 AT1G04870 553 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10019439 [exp] 578 / 0 AT1G04870 551 / 0.0 protein arginine methyltransferase 10 (.1.2) Lus10010162 [exp] 229 / 5e-72 AT3G20020 614 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10017367 [exp] 228 / 2e-70 AT3G20020 636 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 6, protein arginine methyltransferase 6 (.1.2) Lus10000982 [exp] 182 / 2e-53 AT4G29510 619 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10040546 [exp] 180 / 1e-52 AT4G29510 617 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10043412 [exp] 181 / 2e-51 AT5G49020 770 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10034172 [exp] 180 / 2e-51 AT5G49020 743 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 4A, protein arginine methyltransferase 4A (.1.2) Lus10008577 [exp] 150 / 6e-41 AT4G29510 553 / 0.0 PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 1B, ARABIDOPSIS THALIANA ARGININE METHYLTRANSFERASE 11, arginine methyltransferase 11 (.1) Lus10008664 [exp] 148 / 3e-39 AT3G12270 610 / 0.0 ARABIDOPSIS THALIANA PROTEIN ARGININE METHYLTRANSFERASE 3, protein arginine methyltransferase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF05185 [poplar] [flax] PRMT5 PRMT5 arginine-N-methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.018G071200.2 pacid=42801646 polypeptide=Potri.018G071200.2.p locus=Potri.018G071200 ID=Potri.018G071200.2.v4.1 annot-version=v4.1 ATGGGGAGCCACCAGAAGGGAGAGCGTGGAGGCAGCAGCAATGGAAGCGGAGGAGGAGCTGTGGCGGTGGACAAGGGTGTCGATTTCGCACAATATTTCT GCACCTACGCGTTTCTTTATCACCAGAAAGAAATGCTCTCTGATAGAGTACGTATGGACGCTTACTTCAACGCTATTTTCGAGAACAAGCACCATTTCAA GGGAAAGACGGTTTTGGATGTGGGAACAGGGAGTGGCATTCTTGCAATGTGGTCAGCACAAGCAGGTGCTCGAAAGGTCTATGCAGTTGAGGCTACTACG ATGTCAGGACATGCGCAGGCTCTAGTCAAAGCGAATAATCTTCAAGATGTAGTTGAAGTACTTGAGGGTTCCATGGAGGATGTCACCCTGCCAGAGCAAG TTGATGTAATTATCTCAGAGTGGATGGGGTACTTCCTTCTTCGTGAATCCATGTTTGATTCAGTGATATGTGCTCGTGACCGCTGGTTGAAGCCCGGTGG AGTCATGTATCCAAGTCATGCTCGCATGTGGATGGCACCAATCAGGTCAGGATTGGGAGATCAAAAAAAGAGTGATTATGATGGATCGATGAATGATTGG CATGCTTTTATGGAAGACACTAAAGAATACTATGGTGTTGATATGAGTGTTTTAACAAAGCCTTTCTCAGAGGAGCAAATGAAATATTATCTCCAGACAT CATTGTGGCAAAACCTTCATCCACATCAAGTCATTGGGACAGCTGCCATTATAAAGGAGATTGATTGTTTAACTGCCACGGTGAATGACATTCTCAAAGT CAAGTCAGACTTCCTATCGTCAATCACTTTAGAAAACACAAGGCTCTGCGGATTTGGTGGATGGTTTGATGTCCATTTTCGAGGAAGCAAGGTTAATCCG GCACAGCAGGAGATTGAGTTGACAACAGCTCCTAGTGTAGATAATAGCACGCATTGGGGTCAGCAGGTTTTCCTCTTGCATCCTCCTGTACATGTCAGTG AAGGGGATGCTATAAGTGTATCCTTCACCATGGATCGTTCAAAGGAAAATCACAGATTAATGGAGGTTGAGCTTGGCTGTGAGATCAAACAGTCCTCTGG CAAACAGCCTCCTCCTTCCAGAAACAAGTTCTACATAGAGTGA
AA sequence Show only first row Show all	>Potri.018G071200.2 pacid=42801646 polypeptide=Potri.018G071200.2.p locus=Potri.018G071200 ID=Potri.018G071200.2.v4.1 annot-version=v4.1 MGSHQKGERGGSSNGSGGGAVAVDKGVDFAQYFCTYAFLYHQKEMLSDRVRMDAYFNAIFENKHHFKGKTVLDVGTGSGILAMWSAQAGARKVYAVEATT MSGHAQALVKANNLQDVVEVLEGSMEDVTLPEQVDVIISEWMGYFLLRESMFDSVICARDRWLKPGGVMYPSHARMWMAPIRSGLGDQKKSDYDGSMNDW HAFMEDTKEYYGVDMSVLTKPFSEEQMKYYLQTSLWQNLHPHQVIGTAAIIKEIDCLTATVNDILKVKSDFLSSITLENTRLCGFGGWFDVHFRGSKVNP AQQEIELTTAPSVDNSTHWGQQVFLLHPPVHVSEGDAISVSFTMDRSKENHRLMEVELGCEIKQSSGKQPPPSRNKFYIE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04870		PRMT10, ATPRMT1...	protein arginine methyltransfe...		Potri.018G071200 [exp]	0	1
AT3G18580			Nucleic acid-binding, OB-fold-...		Potri.012G058800 [exp]	2.23	0.8101
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G000500 [exp]	5.47	0.7893
AT3G59670			unknown protein		Potri.013G127100 [exp]	5.47	0.7877
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	9.16	0.7672
AT1G79950			RAD3-like DNA-binding helicase...		Potri.001G180200 [exp]	9.79	0.7874
AT2G33840			Tyrosyl-tRNA synthetase, class...		Potri.010G248900 [exp]	11.61	0.7552
AT1G19880			Regulator of chromosome conden...		Potri.002G026600 [exp]	15.09	0.7701
AT5G06770	C3HZnF		KH domain-containing protein /...		Potri.001G013200 [exp]	17.83	0.6593
AT4G37210			Tetratricopeptide repeat (TPR)...		Potri.007G034200 [exp]	18.97	0.6801
AT4G29910		EMB2798, ORC5, ...	EMBRYO DEFECTIVE 2798, origin ...		Potri.001G135975 [exp]	19.18	0.7638

Compare expression of checked genes

Potri.018G071200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.