Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56120 652 / 0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT4G27340 204 / 2e-58 Met-10+ like family protein (.1) AT4G04670 52 / 1e-06 Met-10+ like family protein / kelch repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125700 [exp] 203 / 5e-58 AT4G27340 720 / 0.0 Met-10+ like family protein (.1) Potri.004G015200 [exp] 64 / 2e-10 AT4G04670 1162 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017739 [exp] 635 / 0 AT3G56120 593 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10033083 [exp] 633 / 0 AT3G56120 587 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10037871 [exp] 202 / 9e-58 AT4G27340 733 / 0.0 Met-10+ like family protein (.1) Lus10002756 [exp] 66 / 6e-11 AT4G04670 1205 / 0.0 Met-10+ like family protein / kelch repeat-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF02475 [poplar] [flax] Met_10 Met-10+ like-protein
Representative CDS sequence Show only first row Show all	>Potri.018G072200.2 pacid=42801990 polypeptide=Potri.018G072200.2.p locus=Potri.018G072200 ID=Potri.018G072200.2.v4.1 annot-version=v4.1 ATGTTGGATGAAAGCAAATTTGATGTTGATTTGAAATTATGGGCACTTAGAATCCCTTGTCAGCTTTGCAAAGCCGCCACTAGCATTTTAAACGGATATT TGCTTGACAAGCCCAGAATCAAACCTATTACTGAAGATCCAACTTGCCAAAAGAATCGTTATGTGATATTGTCCGATAGAGTTCAAAGTCATGATTTATC TGAGATATCACCTCAGAAGCTTGATGAATTGAAGAAATTATGTGAGATTCAAGTAATTCCTTATTCGTTGACACTCGGATATTCCTATTGGAGTGCAGAT CATGTATTGAAGCAGATTCTGCCTCCTGGAGTGGAGGTGCCTTCATCTTTTGAAACAATAGGTCAAATTGCCCATCTAAATATACATGATGAACTGCTTC CCTACAAGGATGTTATTGCTAAGGTTATTTATGATAAAAATTATCCCAGGATAAAGACTGTTGTTAATAAAGTTGGAACTATCACAAATGAGTTTCGGGT GCCGAAGTTTGAAATTTTAGCAGGAGAAAGTGACATGGTCACGGAAGTGAAGCAATATGGGGCAACGTTCAAGCTTGATTACAGCTTGGTTTACTGGAAT TCAAGATTGGAACATGAACATATAAGGTTGGTTTCTCAATTTCAACGAGGAGAGATCATCTGTGACATGTTTGCTGGGATCGGTCCTTTCGCTATTCCAG CAGCACAGAAAGGATGCATTGTTTATGCAAATGATTTGAACCCAGATAGCATTCGCTATTTGAAGATTAATGCAGAAATCAATAAGGTTGATGATTGCAT TTGTGCATTCAATATGGATGCTAGGAAATTTATTTCTCAACTTATGGAAGCACCAGTTTGTGAAAATAATGCAGAATGCAATGTTTCAATGCTTAAAGCA TGTGAGGATTGCAGCGTACAGGAAAATGAGGAATCAAGGGTAGAAAATACAAGACTGGGAGTTGAAGCAGAGGAAGCACCTGTTACTGTTCCAGGTAATG TGGAGGGTGCACAAGATTCGAATAGAAATATACACACTTCTGTAGCTGCAACTAAAAGACCTTCGGATTGTTGCTTGGAAGAAAATGGAAGCATCAATGG TGATGGTGCAATGGATGCTTTTAGGAGAAAGGGAGGCAAAAAAAAGAGGATGAGAGCCCTGGAGCTTCCCAATACTAAGCCTTGGGAGCATGTTGATCAT ATAGTCATGAACCTTCCTGCTTCTGCCCTACATTTTCTTGATGCATTCAAGGGGCGTATTCAGAGGAAGGATTGGAAAGGAACTCTTCCCTTGATTCACT GCTATTGCTTCATGCGATCAAATCAAACCCAAGAATTGATAGTTTCGGAGGCAGAGTCTGCCTTGAATGCTCACATACAAGAGCCAATATTTCACAGGGT TAGGGATGTCGCTCCAAATAAGGCCATGTTTTGCTTAAGCTTTAGGCTACCAGAAGCATGTTTCAAAGATGATGCCACTAACATTTAA
AA sequence Show only first row Show all	>Potri.018G072200.2 pacid=42801990 polypeptide=Potri.018G072200.2.p locus=Potri.018G072200 ID=Potri.018G072200.2.v4.1 annot-version=v4.1 MLDESKFDVDLKLWALRIPCQLCKAATSILNGYLLDKPRIKPITEDPTCQKNRYVILSDRVQSHDLSEISPQKLDELKKLCEIQVIPYSLTLGYSYWSAD HVLKQILPPGVEVPSSFETIGQIAHLNIHDELLPYKDVIAKVIYDKNYPRIKTVVNKVGTITNEFRVPKFEILAGESDMVTEVKQYGATFKLDYSLVYWN SRLEHEHIRLVSQFQRGEIICDMFAGIGPFAIPAAQKGCIVYANDLNPDSIRYLKINAEINKVDDCICAFNMDARKFISQLMEAPVCENNAECNVSMLKA CEDCSVQENEESRVENTRLGVEAEEAPVTVPGNVEGAQDSNRNIHTSVAATKRPSDCCLEENGSINGDGAMDAFRRKGGKKKRMRALELPNTKPWEHVDH IVMNLPASALHFLDAFKGRIQRKDWKGTLPLIHCYCFMRSNQTQELIVSEAESALNAHIQEPIFHRVRDVAPNKAMFCLSFRLPEACFKDDATNI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G56120			S-adenosyl-L-methionine-depend...		Potri.018G072200 [exp]	0	1
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.002G024100 [exp]	3.46	0.8150	XRN2.1
AT2G33490			hydroxyproline-rich glycoprote...		Potri.001G061500 [exp]	12.24	0.7558
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Potri.008G070300 [exp]	13.56	0.7960	APC1.1
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Potri.018G118800 [exp]	15.87	0.8022
AT4G19440			Tetratricopeptide repeat (TPR)...		Potri.003G105700 [exp]	20.92	0.7912
AT3G44530		HIRA	homolog of histone chaperone H...		Potri.004G184900 [exp]	22.36	0.7836
AT1G15780			unknown protein		Potri.003G028245 [exp]	28.63	0.7417
AT5G42950			GYF domain-containing protein ...		Potri.002G262300 [exp]	29.79	0.7883
AT1G48520		GATB	GLU-ADT subunit B (.1.2.3)		Potri.010G064700 [exp]	31.49	0.7483
AT3G62310			RNA helicase family protein (....		Potri.002G192500 [exp]	32.18	0.7537

Compare expression of checked genes

Potri.018G072200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.