Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24330 647 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT2G19440 511 / 2e-179 O-Glycosyl hydrolases family 17 protein (.1) AT1G64760 509 / 3e-178 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G04010 501 / 4e-175 O-Glycosyl hydrolases family 17 protein (.1) AT4G31140 496 / 3e-173 O-Glycosyl hydrolases family 17 protein (.1) AT5G18220 491 / 4e-171 O-Glycosyl hydrolases family 17 protein (.1) AT5G58090 482 / 1e-167 O-Glycosyl hydrolases family 17 protein (.1) AT5G64790 448 / 3e-154 O-Glycosyl hydrolases family 17 protein (.1) AT5G20870 447 / 6e-154 O-Glycosyl hydrolases family 17 protein (.1) AT4G17180 426 / 6e-146 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G032900 [exp] 519 / 0 AT1G64760 698 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.013G059700 [exp] 514 / 2e-180 AT1G64760 701 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.006G280700 [exp] 504 / 7e-176 AT4G31140 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G000900 [exp] 494 / 2e-172 AT4G31140 667 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G080600 [exp] 488 / 5e-170 AT5G58090 739 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.007G078900 [exp] 488 / 8e-170 AT5G64790 528 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.018G150400 [exp] 487 / 8e-170 AT5G58090 735 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.006G216700 [exp] 476 / 3e-165 AT5G20870 633 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.016G002800 [exp] 455 / 4e-157 AT4G17180 704 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017740 [exp] 563 / 0 AT3G24330 540 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031098 [exp] 525 / 0 AT1G64760 694 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002633 [exp] 513 / 8e-180 AT1G64760 681 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10043075 [exp] 509 / 4e-178 AT5G20870 631 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10001183 [exp] 506 / 6e-177 AT5G20870 628 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10020261 [exp] 504 / 2e-176 AT1G64760 676 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10040579 [exp] 484 / 9e-169 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10028104 [exp] 484 / 1e-168 AT5G58090 729 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10024535 [exp] 464 / 3e-160 AT4G31140 627 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10039095 [exp] 461 / 2e-159 AT4G17180 727 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.018G072300.1 pacid=42800524 polypeptide=Potri.018G072300.1.p locus=Potri.018G072300 ID=Potri.018G072300.1.v4.1 annot-version=v4.1 ATGGCACTGGCTGGAGTATTTACCACCTATGTTTTGGTGCCGTTTGTTATTTTCTTGACCATGATCCCTGATGTTACTAGTCGTGTTGGAGTGAACTGGG GCACCATGGCTACACACCAACTCGCACCGGATAATGTGGTACAGATGCTGAAAGAAAATGGGTTTGACAAATTGAAGTTGTTTGATGCCGATGAGAAGAT TATGGCAGCTCTGATTGGGACTGATATTGAAGTAATGCTGGCTATACCAAATTACATGCTGCAAGAGATTAGTCAAGATCCTGCGGCTGCTGCTGCCTGG GTTGATGAAAATGTGACTAGCTGGTCTTACACTGGTGGAGTCAAAATCAGGTATGTAGCTGTTGGCAATGAACCTTTCCTGCAAACATATAATGGCACCT ATCTACATGTCACGTTACCAGCTCTAAAAAATATCCAGCATGCCCTCAACAGAGCTGGGCTAGGTTCCCATGTCAAGGCCACAGTCCCCTTCAATGCCGA CATTTACAACTCCCCTGGATCAAACCCAGTTCCATCCGCCGGTGACTTCAGACCTGATGTTCGAGACCTCACGATTGAAGTAGTCCAGTTTCTCAATGAA AACGATGCCCCTTTCACTGTCAACATCTATCCATTCCTGAGTCTATACGGAGACCCTAACTTCCCCCTCGAGTTTGCATTCTTTGATGGACCAAAGAAGC CGATCACAGATGGCGACTCAGTATATACCAACGCGTTTGATGCAAATCTTGACACTCTCATATGGTCATTGGACAAGGCTGGGTATCCTGGCATGCAGAT TATGATTGGAGAAGTCGGTTGGCCAACCGATGGTGACAAAAATGCTAATATCCAAAATGCCAAGAGGTTCAACCAAGGGTTGATTCGACATGCTTTGAGT GGAAACGGAACACCAAAAAGAAAGGGCAAGAACATCGATGTCTATCTGTTTAGCCTCATTGATGAGAATGCTAAAGCAATTGCTCCCGGTAGCTTCGAAA GGCATTGGGGAATATTTGAGTTTGATGGGAAGCCCAAATATGGATTGGATTTGATGGGGTTGGAAGAGGACAAGGGTCTTGCTCCGGTGGAGGGAGTAAG GTATCAGCTAAGAAGGTGGTGTGTTCTAGACCCTGAAGCGACTGAGTTAGCCGAGTTACCAGATAGTATTGACTATGCCTGTAGTCAATCAGATTGTACT GCTTTAGGTTATGGGTCTTCTTGCAATCATCTAAGTGCTGAAGGGAATGCTTCTTATGCCTTCAACATGTACTATCAACTTAATAACCAAGGATATTGGG ACTGTGATTTCTCTGGTTTGGCTCTGGTTACAGACAAGGATCCATCTGAAGAGGACTGCCAGTTCCCGGTAATGATTGCTTATGGTCATTCGTTGGTGCT GAACAGGAACGGGCTTTCAGATGTGTTGCTCGGAATTGTTGTAGGGAACCTCCTATTCTTACTACTACTTAGCTGA
AA sequence Show only first row Show all	>Potri.018G072300.1 pacid=42800524 polypeptide=Potri.018G072300.1.p locus=Potri.018G072300 ID=Potri.018G072300.1.v4.1 annot-version=v4.1 MALAGVFTTYVLVPFVIFLTMIPDVTSRVGVNWGTMATHQLAPDNVVQMLKENGFDKLKLFDADEKIMAALIGTDIEVMLAIPNYMLQEISQDPAAAAAW VDENVTSWSYTGGVKIRYVAVGNEPFLQTYNGTYLHVTLPALKNIQHALNRAGLGSHVKATVPFNADIYNSPGSNPVPSAGDFRPDVRDLTIEVVQFLNE NDAPFTVNIYPFLSLYGDPNFPLEFAFFDGPKKPITDGDSVYTNAFDANLDTLIWSLDKAGYPGMQIMIGEVGWPTDGDKNANIQNAKRFNQGLIRHALS GNGTPKRKGKNIDVYLFSLIDENAKAIAPGSFERHWGIFEFDGKPKYGLDLMGLEEDKGLAPVEGVRYQLRRWCVLDPEATELAELPDSIDYACSQSDCT ALGYGSSCNHLSAEGNASYAFNMYYQLNNQGYWDCDFSGLALVTDKDPSEEDCQFPVMIAYGHSLVLNRNGLSDVLLGIVVGNLLFLLLLS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24330			O-Glycosyl hydrolases family 1...		Potri.018G072300 [exp]	0	1
AT5G50710			unknown protein		Potri.012G101800 [exp]	3.16	0.9006
AT1G59530	bZIP	ATBZIP4	basic leucine-zipper 4 (.1)		Potri.002G115900 [exp]	5.65	0.8865
AT1G27170			transmembrane receptors;ATP bi...		Potri.005G004100 [exp]	5.91	0.8881
AT1G10480	C2H2ZnF	ZFP5	zinc finger protein 5 (.1)		Potri.010G036400 [exp]	11.61	0.9003	Pt-ZFP5.2
AT4G27220			NB-ARC domain-containing disea...		Potri.019G020500 [exp]	12.48	0.8790
AT1G65810			P-loop containing nucleoside t...		Potri.008G143450 [exp]	12.68	0.8636
AT3G22560			Acyl-CoA N-acyltransferases (N...		Potri.008G154700 [exp]	12.72	0.8921
AT2G05760			Xanthine/uracil permease famil...		Potri.014G157800 [exp]	15.09	0.8394
AT4G25835			P-loop containing nucleoside t...		Potri.009G024400 [exp]	15.62	0.8390
					Potri.019G017300 [exp]	16.43	0.8825

Compare expression of checked genes

Potri.018G072300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.