Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24350 333 / 1e-113 ATSYP32, SYP32 syntaxin of plants 32 (.1.2) AT5G05760 217 / 3e-68 ATSYP31, ATSED5, SYP31 T-SNARE SED 5, syntaxin of plants 31 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G157000 [exp] 483 / 1e-172 AT3G24350 294 / 3e-98 syntaxin of plants 32 (.1.2) Potri.010G191100 [exp] 239 / 1e-76 AT5G05760 395 / 8e-138 T-SNARE SED 5, syntaxin of plants 31 (.1) Potri.016G068600 [exp] 41 / 0.0007 AT3G11820 421 / 5e-149 PENETRATION1, SYNTAXIN RELATED PROTEIN 1, syntaxin of plants 121 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033080 [exp] 447 / 1e-158 AT3G24350 432 / 1e-152 syntaxin of plants 32 (.1.2) Lus10017741 [exp] 428 / 3e-151 AT3G24350 410 / 2e-144 syntaxin of plants 32 (.1.2) Lus10028277 [exp] 249 / 9e-81 AT5G05760 417 / 7e-147 T-SNARE SED 5, syntaxin of plants 31 (.1) Lus10040213 [exp] 247 / 8e-80 AT5G05760 418 / 4e-147 T-SNARE SED 5, syntaxin of plants 31 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05739 [poplar] [flax] SNARE SNARE domain PF11416 [poplar] [flax] Syntaxin-5_N Syntaxin-5 N-terminal, Sly1p-binding domain
Representative CDS sequence Show only first row Show all	>Potri.018G072400.1 pacid=42800463 polypeptide=Potri.018G072400.1.p locus=Potri.018G072400 ID=Potri.018G072400.1.v4.1 annot-version=v4.1 ATGATGATGCCGCCGGTAAAAACATCGTATAGGGATCGGACACAAGAGTTTTTGAGTGTAGCAGAGAGGTTAAAGAAATCGTTCTCATCGGCGAACAATG TGGCATCTTCCAGCAGTGGTAGCAGCACCAAGGCCGATGCCACGCGATCTGCTGTGGCGATTCAATCCGAATTTAATAAAAGAGCATCCAAGATTGGGCT TGGGATCCACCAGACATCGCAAAAGCTGGCAAAGCTCGCAAAACTGGCAAAAAGAACATCGGTGTTTGATGATCCAACTCTGGAGATCCAAGAGTTGACA GCAGTAATAAAACAAGATATTACTGTGCTTAATTCAGCTGTAGTAGACCTCCAACTCCTTTGCAGCTCCCAGAATGAAAGTGGAAACATCTCAAGTGATA CTACAACTCATTCAACCACAGTTGTGGATAACCTAAAGAATCGCTTGATGACTGCTACAAAGGAGTTTAAAGAAGTCCTCACAATGCGGACAGAGAATCT AAAGGTTCATGACAATCGAAGGCAGTTGTTTTCTTCCACTGCTTCAAAAGACTCCTCAAATCCCTTTGTTCGCCAGCGTCCACTTGCTTCCAGGACAGCT GCTAATGCATCACAGGCTCCTCCCCCTCCATGGGCCAATGGTTCTGTATCCTCATCCCAGTTATTTACCAGCAAGCAGACAGATGTAGAGTCCCAGCCAC TTTTGCAGCAGCAGCAACAAATGGTTCCACTACAAGACAGTTACATGCAGAGCAGAGCTGAAGCACTTCGTAATGTGGAGTCAACAATCCATGAGCTGAG CAACATCTTTACTCAACTAGCTACTATGGTTTCACAGCAAGGAGAGCTTGCAATAAGGATTGACGAGAACATGGAGGAGACACTGTCAAATGTAGAAGGT GCGCAGGGCCAACTAGTCAGGTATCTTAACAGTATTTCATCCAACCGATGGCTGATGATGAAAATATTCCTTGTACTTGTTGTATTCCTCATGTTTTTTG TGTTTTTTGTGGCGTAA
AA sequence Show only first row Show all	>Potri.018G072400.1 pacid=42800463 polypeptide=Potri.018G072400.1.p locus=Potri.018G072400 ID=Potri.018G072400.1.v4.1 annot-version=v4.1 MMMPPVKTSYRDRTQEFLSVAERLKKSFSSANNVASSSSGSSTKADATRSAVAIQSEFNKRASKIGLGIHQTSQKLAKLAKLAKRTSVFDDPTLEIQELT AVIKQDITVLNSAVVDLQLLCSSQNESGNISSDTTTHSTTVVDNLKNRLMTATKEFKEVLTMRTENLKVHDNRRQLFSSTASKDSSNPFVRQRPLASRTA ANASQAPPPPWANGSVSSSQLFTSKQTDVESQPLLQQQQQMVPLQDSYMQSRAEALRNVESTIHELSNIFTQLATMVSQQGELAIRIDENMEETLSNVEG AQGQLVRYLNSISSNRWLMMKIFLVLVVFLMFFVFFVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24350		ATSYP32, SYP32	syntaxin of plants 32 (.1.2)		Potri.018G072400 [exp]	0	1
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.006G131000 [exp]	4.47	0.9384
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.004G086100 [exp]	8.12	0.9176
AT2G28315			Nucleotide/sugar transporter f...		Potri.004G211900 [exp]	9.79	0.9310
AT2G46000			unknown protein		Potri.014G086200 [exp]	10.29	0.8693
AT3G56230			BTB/POZ domain-containing prot...		Potri.013G083800 [exp]	10.48	0.9230
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.011G079400 [exp]	13.96	0.9281
AT5G66060			2-oxoglutarate (2OG) and Fe(II...		Potri.005G108000 [exp]	14.89	0.9220
AT3G44150			unknown protein		Potri.016G068000 [exp]	15.36	0.9256
					Potri.001G022601 [exp]	19.62	0.8967
AT5G27490			Integral membrane Yip1 family ...		Potri.005G033900 [exp]	19.97	0.9205

Compare expression of checked genes

Potri.018G072400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.