Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08510 613 / 0 FATB fatty acyl-ACP thioesterases B (.1) AT3G25110 265 / 1e-85 ATFATA fatA acyl-ACP thioesterase (.1) AT4G13050 260 / 2e-83 Acyl-ACP thioesterase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G155800 [exp] 697 / 0 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G157200 [exp] 697 / 0 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.001G177600 [exp] 355 / 4e-120 AT1G08510 343 / 2e-115 fatty acyl-ACP thioesterases B (.1) Potri.001G177900 [exp] 353 / 2e-119 AT1G08510 339 / 5e-114 fatty acyl-ACP thioesterases B (.1) Potri.012G101500 [exp] 338 / 1e-113 AT1G08510 329 / 4e-110 fatty acyl-ACP thioesterases B (.1) Potri.015G099600 [exp] 331 / 7e-111 AT1G08510 330 / 2e-110 fatty acyl-ACP thioesterases B (.1) Potri.010G117400 [exp] 300 / 2e-98 AT1G08510 294 / 2e-96 fatty acyl-ACP thioesterases B (.1) Potri.012G051400 [exp] 293 / 3e-96 AT1G08510 297 / 1e-97 fatty acyl-ACP thioesterases B (.1) Potri.002G245600 [exp] 261 / 6e-84 AT3G25110 521 / 0.0 fatA acyl-ACP thioesterase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017751 [exp] 625 / 0 AT1G08510 602 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10033072 [exp] 625 / 0 AT1G08510 605 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10007942 [exp] 289 / 5e-94 AT1G08510 288 / 6e-94 fatty acyl-ACP thioesterases B (.1) Lus10013480 [exp] 289 / 7e-94 AT1G08510 287 / 2e-93 fatty acyl-ACP thioesterases B (.1) Lus10035900 [exp] 283 / 2e-92 AT1G08510 278 / 1e-90 fatty acyl-ACP thioesterases B (.1) Lus10035901 [exp] 276 / 3e-89 AT1G08510 269 / 7e-87 fatty acyl-ACP thioesterases B (.1) Lus10025763 [exp] 275 / 4e-89 AT1G08510 270 / 1e-87 fatty acyl-ACP thioesterases B (.1) Lus10034617 [exp] 274 / 3e-88 AT1G08510 275 / 6e-89 fatty acyl-ACP thioesterases B (.1) Lus10000365 [exp] 273 / 7e-88 AT1G08510 274 / 2e-88 fatty acyl-ACP thioesterases B (.1) Lus10025762 [exp] 272 / 8e-88 AT1G08510 268 / 2e-86 fatty acyl-ACP thioesterases B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [poplar] [flax] HotDog PF01643 [poplar] [flax] Acyl-ACP_TE Acyl-ACP thioesterase CL0050 [poplar] [flax] PF12590 [poplar] [flax] Acyl-thio_N Acyl-ATP thioesterase
Representative CDS sequence Show only first row Show all	>Potri.018G072700.7 pacid=42800601 polypeptide=Potri.018G072700.7.p locus=Potri.018G072700 ID=Potri.018G072700.7.v4.1 annot-version=v4.1 ATGGTTGCCACAGCAGCTACTTCGTCATTTTTCCCAGTTCCTTCACCACCTGGAGATGCCAAGTCCTCCAAGGTTGGTAGTGGTTCTGCAAGTTTGGGAG GAATCAAATCGAAATCTGCTTCCTCTGGAGCTTTGCAGGTTAAGGCAAATGCCCAAGCTCCTCCGAAGATAAATGGCTCTCCAGTTGGCTTGACAGCATC AGTGGAAACTGCGAAGAAGGAGGATGTTGTCTCATCACCGGCACCCCGGACATTTATCAACCAATTACCTGATTGGAGCATGCTTCTTGCTGCAATTACA ACCATGTTTTTGGCAGCAGAGAAGCAGTGGATGATGCTTGATTGGAAACCAAAGCGAGCTGACATGCTTATTGATCCCTTTGGTATTGGAAGAATTGTCC AAGATGGTCTTGTCTTCAGCCAGAATTTCTCAATTAGGTCATATGAAATTGGTGCAGATCGTACTGCGTCTATAGAGACGTTGATGAACCATTTACAAGA AACAGCACTTAATCATGTTAAGACTGCTGGGCTTCTTGGAGATGGATTTGGTTCAACCCCAGAGATGTCCAAAAGGAACCTGATATGGGTGGTAACTCGA ATGCAGATTCTAGTCGATCGTTATCCTACATGGGGTGATGTTGTCCATGTGGATACTTGGGTGAGTGCATCAGGAAAGAATGGTATGCGCCGTGATTGGC TTGTCCGTGATGCTAAAACTGGTGAAACTCTTACGAGAGCCTCCAGTTTGTGGGTGATGATGAATAAAGTGACAAGGAGGTTATCTAAAATTCCTGAAGA TGTTCGAGGTGAAATAGAGCCTTATTTTCTGAATTCTGATCCTGTTGTGAATGAGGACAGCACAAAACTGCCAAAACTTGACGACAAGACGGCGGACATT ATCCGCAAAGGCCTAACTCCTAGATGGAATGATTTAGATGTCAACCAGCATGTTAACAATGTGAAATACATAGGCTGGATCCTTGAGAGCGCTCCTCCCC CAGTCCTGGAGAGTCATGAGCTTGCTGCCATTACTTTGGAGTACAGGAGGGAGTGTGGCAGGGACAGCGTGCTGCAGTCCTTGACTGCTGTATCTGGCGC TGGCATTGGAAATTTGGGCGGTCCTGGTAAAGTTGAGTGTCAACATTTGCTGCGACATGAGGATGGTGCTGAGATCGTGAGGGGAAGGACCGAGTGGAGG CCCAAACATGCCAACAATTTTGGCATGATGGGTGGTCAGTTGTCAGCTGATGAGAGTGGTGCTTAA
AA sequence Show only first row Show all	>Potri.018G072700.7 pacid=42800601 polypeptide=Potri.018G072700.7.p locus=Potri.018G072700 ID=Potri.018G072700.7.v4.1 annot-version=v4.1 MVATAATSSFFPVPSPPGDAKSSKVGSGSASLGGIKSKSASSGALQVKANAQAPPKINGSPVGLTASVETAKKEDVVSSPAPRTFINQLPDWSMLLAAIT TMFLAAEKQWMMLDWKPKRADMLIDPFGIGRIVQDGLVFSQNFSIRSYEIGADRTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMSKRNLIWVVTR MQILVDRYPTWGDVVHVDTWVSASGKNGMRRDWLVRDAKTGETLTRASSLWVMMNKVTRRLSKIPEDVRGEIEPYFLNSDPVVNEDSTKLPKLDDKTADI IRKGLTPRWNDLDVNQHVNNVKYIGWILESAPPPVLESHELAAITLEYRRECGRDSVLQSLTAVSGAGIGNLGGPGKVECQHLLRHEDGAEIVRGRTEWR PKHANNFGMMGGQLSADESGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.018G072700 [exp]	0	1
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Potri.003G151750 [exp]	6.63	0.7416
AT1G54820			Protein kinase superfamily pro...		Potri.013G025700 [exp]	21.26	0.7902
AT5G10730			NAD(P)-binding Rossmann-fold s...		Potri.006G268000 [exp]	21.35	0.7176
AT5G59845			Gibberellin-regulated family p...		Potri.014G020100 [exp]	22.75	0.7257
AT1G03790	C3HZnF	SOM	SOMNUS, Zinc finger C-x8-C-x5-...		Potri.017G013400 [exp]	30.98	0.7043
AT3G50120			Plant protein of unknown funct...		Potri.006G042946 [exp]	39.64	0.7091
AT5G36880		ACS	acetyl-CoA synthetase (.1.2)		Potri.014G140900 [exp]	40.17	0.7266
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.008G054600 [exp]	44.89	0.6698	HSP70.4
AT3G55700			UDP-Glycosyltransferase superf...		Potri.010G195600 [exp]	64.21	0.7022
AT2G35900			unknown protein		Potri.016G066800 [exp]	120.00	0.6548

Compare expression of checked genes

Potri.018G072700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.