Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19930 382 / 2e-134 Protein of unknown function DUF92, transmembrane (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017753 [exp] 382 / 1e-134 AT5G19930 402 / 1e-142 Protein of unknown function DUF92, transmembrane (.1.2) Lus10033068 [exp] 363 / 8e-127 AT5G19930 380 / 9e-134 Protein of unknown function DUF92, transmembrane (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01940 [poplar] [flax] DUF92 Integral membrane protein DUF92
Representative CDS sequence Show only first row Show all	>Potri.018G073000.3 pacid=42800510 polypeptide=Potri.018G073000.3.p locus=Potri.018G073000 ID=Potri.018G073000.3.v4.1 annot-version=v4.1 ATGGAAAATGTCGTCATCCAACCGTCAGTAGCGGTGCTAATCTCTTTTGTAATCGCGATTAAAGCTTACAGAAGAAAATCTCTAGACGTAACAGGAGCAG TCGCTGGGTTCATTGTTATGACCCTTCACTTTGCTATTAGCTACAGATTTGGAGCTATATTGCTTGTCTTCTTTTTCAGTTCATCCAAGCTTACCAAGGT TGGAGAAGACAAGAAGAGACGCTTTGACGCCGAGTTCAAGGAGGGTGGACAAAGAAACTGGATACAAGTGCTGGCTAATAGTGGTATAGCTTCTGTTTTG GTTCTGGCTGTTGGGAGATTGGCCGGCTGGGAGGACAAGTGCTTGGATGGAAAAGAATCGGCCGTCATCACCTCTCTTATTGGAGGGATCATCGGTCAGT ATTCATGCTGCAATGGAGACACTTGGTCTTCCGAGCTTGGTGTACTCAGCGATGCGCAACCTCGTTTGATCACAACCTTTAAGCCTGTTCGGAGGGGTAC AAATGGTGGAGTCACGTTAGCAGGTCTTCTAGCAGCTGCAGCAGCAGGAGGTGTTATTGGGCTTGCATTCGTGCTCATAGGGTTTTTCACAACGAAATGT GTGTTTGATGTAGCACTCAAGCAGCTCTTAGTTATACCGGTTGCTGCGCTGGCAGGGTTATGTGGGAGTCTGATAGATTCTCTGTTGGGAGCTACTTTGC AATTCAGTGGATTCTGCACTGTTCGGAACAAAGTTGTTGGAAAACCTGGACCAACAGTGAGGAAAATTTCAGGACTTGACATTCTCGACAACAATGCTGT GAACCTTGTCTCTATACTGCTGACCACCTTGCTGACTTCCGTTGGCTGCGCATACATTTTCTGA
AA sequence Show only first row Show all	>Potri.018G073000.3 pacid=42800510 polypeptide=Potri.018G073000.3.p locus=Potri.018G073000 ID=Potri.018G073000.3.v4.1 annot-version=v4.1 MENVVIQPSVAVLISFVIAIKAYRRKSLDVTGAVAGFIVMTLHFAISYRFGAILLVFFFSSSKLTKVGEDKKRRFDAEFKEGGQRNWIQVLANSGIASVL VLAVGRLAGWEDKCLDGKESAVITSLIGGIIGQYSCCNGDTWSSELGVLSDAQPRLITTFKPVRRGTNGGVTLAGLLAAAAAGGVIGLAFVLIGFFTTKC VFDVALKQLLVIPVAALAGLCGSLIDSLLGATLQFSGFCTVRNKVVGKPGPTVRKISGLDILDNNAVNLVSILLTTLLTSVGCAYIF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19930			Protein of unknown function DU...		Potri.018G073000 [exp]	0	1
AT4G16210		ECHIA, E-COAH-2	ENOYL-COA HYDRATASE 2, enoyl-C...		Potri.010G146400 [exp]	1.41	0.8231
AT5G47310			PPPDE putative thiol peptidase...		Potri.001G154400 [exp]	1.73	0.8479
AT3G62970			zinc finger (C3HC4-type RING f...		Potri.014G134400 [exp]	3.46	0.7766
AT2G32260		ATCCT1	phosphorylcholine cytidylyltra...		Potri.001G159400 [exp]	4.58	0.7984
AT5G38360			alpha/beta-Hydrolases superfam...		Potri.004G099300 [exp]	5.47	0.7789
					Potri.008G045532 [exp]	8.94	0.7339
AT4G36400		D2HGDH	D-2-hydroxyglutarate dehydroge...		Potri.007G018600 [exp]	10.77	0.7182
AT1G04850			ubiquitin-associated (UBA)/TS-...		Potri.017G056900 [exp]	11.74	0.6990
AT1G12150			Plant protein of unknown funct...		Potri.006G004100 [exp]	15.00	0.7595
					Potri.014G044700 [exp]	16.30	0.7250

Compare expression of checked genes

Potri.018G073000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.