Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19950 274 / 6e-87 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3) AT5G63540 48 / 2e-05 BLAP75, ATRMI1 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100200 [exp] 49 / 4e-06 AT5G63540 468 / 3e-158 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043254 [exp] 408 / 2e-138 AT5G19950 285 / 4e-91 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3) Lus10019397 [exp] 403 / 2e-136 AT5G19950 285 / 2e-91 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3) Lus10000162 [exp] 88 / 1e-20 AT5G19950 63 / 2e-12 Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2), Domain of unknown function (DUF1767) (.3) Lus10022440 [exp] 49 / 7e-06 AT5G63540 452 / 1e-151 RECQ MEDIATED INSTABILITY 1, Domain of unknown function (DUF1767) (.1), Domain of unknown function (DUF1767) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [poplar] [flax] OB PF08585 [poplar] [flax] RMI1_N RecQ mediated genome instability protein
Representative CDS sequence Show only first row Show all	>Potri.018G073100.4 pacid=42801674 polypeptide=Potri.018G073100.4.p locus=Potri.018G073100 ID=Potri.018G073100.4.v4.1 annot-version=v4.1 ATGGATGGACTGGAAGAGAGCTCGAGCAAAGCGGCAGAGGCAGTGCTGGAAATCCTAAGGACCAGGGGCTGGTCTCTTGGCGGAATAGATCAGTTAAACG CCTTAATCATAATTCACTCTGCTTTATCTGATGACGGCGACCCTTGCACCGTCGCAAACGCCGTCGAGTCCGAGCTCCTCAACATGGATCTTAGATCCAT CGGACTCAAGTCCTTACCCGACCCAAACCTCCTCAATAAAACCTCCTATCTTCAAGGCCCCAAAATCCTCCAGATATCTGCAGTGAGAGATATTTCTGTT AGTAGCATAGAAGGGTTTCCGAATTCAAGCAAACGGCGACTGTTAAAACTCGGTCTCACTGATGGGCACAACGAGATAACTGCAATCGAATACTCTCATA TTCCTTCAATCCCAAATGATATAGCTCCTGGTTCTAAGGTTCGGTTGGATAACAAAGCTCCATTACATAACTGTATTGTATGTTTGAATCCTAAAGTTAT AACTGTAATAGGAGGCATTGTCCAATCACTTCATGAAGAATGGCAAATGAACCAAAAATATTCTGGTTTTTCACGTTCATCATTAAGGTTATCACAGGAA ACTGATAATGGTGGCCCTCCTCCTTTCGAAAAGTTGCAAATTGGAGCACCCTCTCGTAGGTCTTCTCGGCAAGTCATACGATCGGTTTCTTATGAAGAGA AGGCAAATATTCCAGATTACTTTAAGTCTACCTCCAACAGCACCGTGCAAATTAGCACAGAAACTGCTGGAAACACCAAAGTTCTACCTCTTGATGCTCA AAGAAAAGCAGATAGTGTTGATGACAAAGTGAGAGTATCTTCCCTCAGAACAAGTTACAAAGAAAATCCTAGAAACTTGCAGTGGAGATCAAAGGAAGAT TATAATGGGTCTACCTCCAAGAGCAATGTGCCTACTGTTGCAAAAACTTCTGGAAATGCTGAACTAAGGCCAATGGATTCAGAGCAGAAAGTAGATGATG ATAAGGAAAAAACAGTTTCCCTTAATGAAAGTCTTGAACAAAAGCCAAATGACTCTTCTGCAAGACAGAAGGAAGTAATAGAAACAGTTCCTGTTCAAAA TCAAGCAGCTTCTCAAAAGTTACTTTTGAAAATGAATCACCACCCAAATCAAGGTGATCGGCATTCAAAAGGTCAGAAATATAGGGGGAAGAATAAACAA GAAGAATCACAAGTTTTCACTCTAGAGGAGTGGGAAAAGAGTAATGCAGGGCGTCTGACAAAAAATGATTTTCCGGATACTAGTTGTGATGAGGATCTTG CATCAAAGCTTCAAGACCAACTTGATGTGGAAGATTTTCATGTACATAGGAGAACTCATAACAAGGTGGTGGATGACATTAGAATGAGCATGTTTAGTTA TGAAAGAGATGGCAACAAGGTTCATGAAATGGAACATGGAGGAAGAGGAAGGGGGAGAGGGAGGGGGGGAGGGAGGGGAAGGGGGGGAGGGAGGAGAAGA TATAATTAA
AA sequence Show only first row Show all	>Potri.018G073100.4 pacid=42801674 polypeptide=Potri.018G073100.4.p locus=Potri.018G073100 ID=Potri.018G073100.4.v4.1 annot-version=v4.1 MDGLEESSSKAAEAVLEILRTRGWSLGGIDQLNALIIIHSALSDDGDPCTVANAVESELLNMDLRSIGLKSLPDPNLLNKTSYLQGPKILQISAVRDISV SSIEGFPNSSKRRLLKLGLTDGHNEITAIEYSHIPSIPNDIAPGSKVRLDNKAPLHNCIVCLNPKVITVIGGIVQSLHEEWQMNQKYSGFSRSSLRLSQE TDNGGPPPFEKLQIGAPSRRSSRQVIRSVSYEEKANIPDYFKSTSNSTVQISTETAGNTKVLPLDAQRKADSVDDKVRVSSLRTSYKENPRNLQWRSKED YNGSTSKSNVPTVAKTSGNAELRPMDSEQKVDDDKEKTVSLNESLEQKPNDSSARQKEVIETVPVQNQAASQKLLLKMNHHPNQGDRHSKGQKYRGKNKQ EESQVFTLEEWEKSNAGRLTKNDFPDTSCDEDLASKLQDQLDVEDFHVHRRTHNKVVDDIRMSMFSYERDGNKVHEMEHGGRGRGRGRGGGRGRGGGRRR YN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19950			Domain of unknown function (DU...		Potri.018G073100 [exp]	0	1
AT5G67530		ATPUB49	plant U-box 49 (.1)		Potri.005G148900 [exp]	4.24	0.7603
AT4G08350		GTA2, GTA02	global transcription factor gr...		Potri.004G162500 [exp]	18.73	0.7150
AT1G04300			TRAF-like superfamily protein ...		Potri.010G075000 [exp]	25.05	0.7470
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.014G051500 [exp]	25.80	0.7104
AT3G63070			Tudor/PWWP/MBT domain-containi...		Potri.014G138700 [exp]	26.15	0.7487
AT5G46070			Guanylate-binding family prote...		Potri.011G058500 [exp]	31.46	0.7068
AT5G17930			MIF4G domain-containing protei...		Potri.013G061400 [exp]	34.64	0.7368
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.001G057200 [exp]	35.09	0.7349
AT1G79610		ATNHX6	Na+/H+ antiporter 6, ARABIDOPS...		Potri.016G000200 [exp]	40.49	0.6182
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.005G080600 [exp]	40.73	0.7069

Compare expression of checked genes

Potri.018G073100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.