Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11020 389 / 2e-136 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G22120 150 / 5e-43 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G50440 110 / 2e-28 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT4G32670 55 / 4e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G60580 45 / 4e-05 RING/U-box superfamily protein (.1.2.3.4) AT4G34100 42 / 0.0004 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G154800 [exp] 482 / 3e-173 AT1G11020 406 / 4e-143 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.005G081500 [exp] 150 / 5e-43 AT2G22120 521 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.007G085900 [exp] 128 / 5e-35 AT2G22120 388 / 4e-136 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G252900 [exp] 111 / 8e-29 AT1G50440 370 / 5e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.008G005800 [exp] 107 / 3e-27 AT1G50440 374 / 2e-132 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.014G121900 [exp] 47 / 6e-06 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G196600 [exp] 46 / 1e-05 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.010G014950 [exp] 43 / 0.0002 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014800 [exp] 43 / 0.0002 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033053 [exp] 435 / 1e-154 AT1G11020 457 / 2e-163 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017764 [exp] 272 / 4e-92 AT1G11020 254 / 3e-85 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016426 [exp] 159 / 3e-46 AT2G22120 543 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10019687 [exp] 155 / 5e-45 AT2G22120 546 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10034832 [exp] 110 / 4e-27 AT1G50440 379 / 7e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10033381 [exp] 101 / 2e-24 AT1G50440 340 / 1e-117 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10022585 [exp] 47 / 1e-05 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10021482 [exp] 46 / 3e-05 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10033985 [exp] 43 / 0.0004 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10010011 [exp] 42 / 0.0004 AT1G02610 174 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.018G073400.2 pacid=42800320 polypeptide=Potri.018G073400.2.p locus=Potri.018G073400 ID=Potri.018G073400.2.v4.1 annot-version=v4.1 ATGAAAGGGGTTGAAATGCAGCAGCAGCTAGAATTAGGGAGGAGCGGTGAGAGTCACAGTGATTCTGATCCTCTGCTACAGAATCAGGCTGATGCAAGTT CCACTCAAGAAATCACCGTCAACAATGATGATATTGAAAACGTTTCTGTTCCTTGTTGCCGTATTTGTCTCGAAACCGACTGCGAACCAGGTGATGAATT GATATCTCCATGCATGTGCAAAGGAACCCAGCAGTTTGTTCATCGTTCATGCCTTGATCATTGGCGCTCAGTTAAGGAAGGATTTGCTTTCTCTCATTGC ACAACTTGTAAAGCTCAATTTCATCTTCGAGTTGCTTTGTCGGAGGACAACTCCTGGCGCAAAATGAAATTCAGACTTTTTGTTACAAGGGATATTGTCT TTGTATTCTTTGCTGTACAAATTGTCATTGCTGCAATGGGTGGTTTTGCATACCTTATGGACAAAGATGGGACCTTTAGGAATTCGTTTAGTGATGGATG GGATCGTATACTGTCCAAGCATCCTATACCATTTTATTATTGCATAGGAGTACTGGTCTTCTTTGTGCTTCTTGGGTTTTTTGGCCTCATATTACATTGT TCCTCCCTCAATAGTAATGATCCAAGGATGGCTGGCTGCCAGAACTGCTGTTATGGATGGGGAATTCTAGACTGTTTCCCTGCTTCCATGGAGGCATGCT TTGCATTGGTTGTGGTTTTTGTCATCCTCTTTGCCATTCTGGGAATCGCTTATGGCTTCCTTGCTGCCACAATGGCCATTCAAAAAATTTGGCAGAGGCA TTACCACATCCTCATTAAGAGGGAGCTTACAAAGGAGTACATAGTGGAGGATCTACATGGCTCTTATTCTCCAGCGAAATTGGACTCTGAACATGAAGAA CGTCTGAAAATGGTTAAGCTTTTATAA
AA sequence Show only first row Show all	>Potri.018G073400.2 pacid=42800320 polypeptide=Potri.018G073400.2.p locus=Potri.018G073400 ID=Potri.018G073400.2.v4.1 annot-version=v4.1 MKGVEMQQQLELGRSGESHSDSDPLLQNQADASSTQEITVNNDDIENVSVPCCRICLETDCEPGDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHC TTCKAQFHLRVALSEDNSWRKMKFRLFVTRDIVFVFFAVQIVIAAMGGFAYLMDKDGTFRNSFSDGWDRILSKHPIPFYYCIGVLVFFVLLGFFGLILHC SSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVILFAILGIAYGFLAATMAIQKIWQRHYHILIKRELTKEYIVEDLHGSYSPAKLDSEHEE RLKMVKLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11020			RING/FYVE/PHD zinc finger supe...		Potri.018G073400 [exp]	0	1
AT5G40670			PQ-loop repeat family protein ...		Potri.017G070300 [exp]	2.00	0.7600
AT1G22040			Galactose oxidase/kelch repeat...		Potri.005G170000 [exp]	3.16	0.6919
AT1G55265			Protein of unknown function, D...		Potri.001G008320 [exp]	3.87	0.7159
AT4G00355		ATI2	ATG8-interacting protein 2, un...		Potri.014G086000 [exp]	6.92	0.6929
AT1G16180			Serinc-domain containing serin...		Potri.003G186500 [exp]	7.00	0.6749
AT3G12760			unknown protein		Potri.008G083800 [exp]	7.21	0.6139
AT5G25265			unknown protein		Potri.006G258800 [exp]	8.83	0.6884
AT3G60800			DHHC-type zinc finger family p...		Potri.003G115600 [exp]	9.89	0.6071
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070750 [exp]	14.38	0.6453
AT3G56460			GroES-like zinc-binding alcoho...		Potri.019G065700 [exp]	15.96	0.5954

Compare expression of checked genes

Potri.018G073400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.