Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20140 528 / 0 SOUL heme-binding family protein (.1.2) AT2G37970 80 / 5e-17 SOUL-1 SOUL heme-binding family protein (.1) AT3G10130 77 / 8e-16 SOUL heme-binding family protein (.1) AT1G17100 49 / 2e-06 SOUL heme-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G098500 [exp] 97 / 7e-23 AT3G10130 295 / 7e-100 SOUL heme-binding family protein (.1) Potri.016G109400 [exp] 83 / 2e-18 AT2G37970 260 / 1e-88 SOUL heme-binding family protein (.1) Potri.001G067100 [exp] 51 / 3e-07 AT1G17100 142 / 6e-42 SOUL heme-binding family protein (.1) Potri.001G379000 [exp] 49 / 1e-06 AT1G17100 275 / 3e-94 SOUL heme-binding family protein (.1) Potri.010G044200 [exp] 48 / 3e-06 AT1G17100 119 / 4e-33 SOUL heme-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013345 [exp] 502 / 1e-178 AT5G20140 464 / 8e-164 SOUL heme-binding family protein (.1.2) Lus10019445 [exp] 457 / 7e-162 AT5G20140 422 / 3e-148 SOUL heme-binding family protein (.1.2) Lus10001847 [exp] 373 / 5e-128 AT5G20140 330 / 3e-111 SOUL heme-binding family protein (.1.2) Lus10022712 [exp] 93 / 5e-21 AT3G10130 366 / 1e-127 SOUL heme-binding family protein (.1) Lus10017193 [exp] 77 / 2e-16 AT2G37970 273 / 4e-94 SOUL heme-binding family protein (.1) Lus10027752 [exp] 77 / 2e-16 AT2G37970 275 / 2e-94 SOUL heme-binding family protein (.1) Lus10040682 [exp] 65 / 3e-13 AT5G20140 67 / 1e-14 SOUL heme-binding family protein (.1.2) Lus10014203 [exp] 66 / 9e-12 AT3G10130 290 / 4e-98 SOUL heme-binding family protein (.1) Lus10000106 [exp] 58 / 9e-10 AT2G37970 207 / 3e-68 SOUL heme-binding family protein (.1) Lus10042093 [exp] 56 / 1e-08 AT1G17100 143 / 2e-42 SOUL heme-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0319 [poplar] [flax] SHS2 PF04832 [poplar] [flax] SOUL SOUL heme-binding protein CL0051 [poplar] [flax] NTF2 PF10184 [poplar] [flax] DUF2358 Uncharacterized conserved protein (DUF2358)
Representative CDS sequence Show only first row Show all	>Potri.018G073501.1 pacid=42800698 polypeptide=Potri.018G073501.1.p locus=Potri.018G073501 ID=Potri.018G073501.1.v4.1 annot-version=v4.1 ATGGCCACCACTCAACTTTCCCTCCAAATCCTCCGCCCTCTACCGGCCGCCAGTCAAACCTGTGGGCGACAGAGCTATGGTTTCCAATCAAGAAATTCAG CCATCAGAACTCGGAAAAACTTGAAATGGGCCCTCAGGCTAAGCCTGGTTGACCAGAACCAGCCACAGTCACAATCAAGAGGCGTGGACGTGAAACAGCT GGTGGACTTCTTGTATGATGATCTTCCACATCTCTTCGATGATCAGGGAATTGACCGGACGGCGTATGATGAGCGTGTGAAATTCAGGGACCCCATCACT AAGCATGATAGTATAAGTGGGTATCTTTTTAACATTGCTCTTTTGAAGAATCTCTTCAGGCCTCAGTTCTTCTTGCATTGGGTCAAACAGACAGGAACTT ATGAGATAACTACAAGGTGGACTATGGTGATGAAGTTCATGCTTTTGCCATGGAAACCAGAATTAGTGTTCACAGGGACCTCTATCATGGGCATCAATCC ACAGACAGGAAAGTTTAACAGCCATCTGGACTTCTGGGATTCCATAGAGAATAATAACTATTTTTCTCTTGAAGGTTTGCGGAATGTAGTTAAGCAGTTG AGAATTTACAAGACTCCTGACTTAGAAACACCCAGATATCAGATACTGAAAAGGACTGCAAACTATGAGGTACGGAAGTACAGCCCATTCATAGTGGTAG AAGCGAATGGAGATAAGTTGTCTGGGTCAAATGGATTTAACGATGTTACTGGGTATATTTTTGGAAAGAATTCCACGATGGAGAAAATACCAATGACTAC TCCCGTGTTCACTCAAGCAAATGACACCGGATTGTCCAAAGTATCCATCCAAATAGTTCTTCCTCTGGAGAAAGATTTAAGCAGCTTACCAAATCCTAAT CAAGAGACAATTAGCATAAGAAAGGTGGAAGGAGGCATTGCTGCAGTAGATAAATTCAGTGGGAAACCAACTGAGGCTATTGTTTGTCAGAAAGAGAAAG CACTGCGATCATGTCTTCTTAAAGATGGTCTTAAGCCAAAGATGGGTTGTTTGCTCGCTCGCTATAATGATCCAGGCCGAACATGGGAATTCATAATGAG GAATGAAGTGCTAATATGGCTTGAAGAATTCTCGCTGGAATAG
AA sequence Show only first row Show all	>Potri.018G073501.1 pacid=42800698 polypeptide=Potri.018G073501.1.p locus=Potri.018G073501 ID=Potri.018G073501.1.v4.1 annot-version=v4.1 MATTQLSLQILRPLPAASQTCGRQSYGFQSRNSAIRTRKNLKWALRLSLVDQNQPQSQSRGVDVKQLVDFLYDDLPHLFDDQGIDRTAYDERVKFRDPIT KHDSISGYLFNIALLKNLFRPQFFLHWVKQTGTYEITTRWTMVMKFMLLPWKPELVFTGTSIMGINPQTGKFNSHLDFWDSIENNNYFSLEGLRNVVKQL RIYKTPDLETPRYQILKRTANYEVRKYSPFIVVEANGDKLSGSNGFNDVTGYIFGKNSTMEKIPMTTPVFTQANDTGLSKVSIQIVLPLEKDLSSLPNPN QETISIRKVEGGIAAVDKFSGKPTEAIVCQKEKALRSCLLKDGLKPKMGCLLARYNDPGRTWEFIMRNEVLIWLEEFSLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20140			SOUL heme-binding family prote...		Potri.018G073501 [exp]	0	1
AT5G58330			lactate/malate dehydrogenase f...		Potri.008G031700 [exp]	2.00	0.9903
AT1G13270		MAP1B, MAP1C	methionine aminopeptidase 1B (...		Potri.008G117200 [exp]	2.44	0.9872
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Potri.001G005900 [exp]	3.00	0.9901
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Potri.013G088100 [exp]	3.31	0.9793
AT5G43750		PnsB5, NDH18	Photosynthetic NDH subcomplex...		Potri.010G078800 [exp]	3.46	0.9876
AT3G21790			UDP-Glycosyltransferase superf...		Potri.006G007350 [exp]	3.87	0.9780
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Potri.010G110400 [exp]	3.87	0.9873
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Potri.013G053100 [exp]	4.00	0.9821
AT4G31530			NAD(P)-binding Rossmann-fold s...		Potri.001G253900 [exp]	4.58	0.9834
AT2G28800		ABL3, ALB3	ALBINO 3, 63 kDa inner membran...		Potri.001G237800 [exp]	8.36	0.9799	ALB3.2

Compare expression of checked genes

Potri.018G073501 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.