Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25510 609 / 0 Protein phosphatase 2A regulatory B subunit family protein (.1) AT1G13460 483 / 6e-168 Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G26020 478 / 2e-165 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) AT3G21650 471 / 1e-162 Protein phosphatase 2A regulatory B subunit family protein (.1) AT4G15415 470 / 3e-162 ATB'GAMMA, ATB' GAMMA Protein phosphatase 2A regulatory B subunit family protein (.1.2) AT3G09880 462 / 1e-159 ATB' BETA, ATB'BETA Protein phosphatase 2A regulatory B subunit family protein (.1) AT5G03470 462 / 2e-159 ATB' ALPHA, ATB'ALPHA Protein phosphatase 2A regulatory B subunit family protein (.1) AT3G26030 416 / 1e-141 ATB' DELTA, ATB'DELTA serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B prime delta (.1) AT3G54930 402 / 6e-136 Protein phosphatase 2A regulatory B subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G247100 [exp] 622 / 0 AT5G25510 800 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.018G034200 [exp] 606 / 0 AT5G25510 809 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.014G157000 [exp] 495 / 8e-172 AT3G21650 775 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Potri.010G054300 [exp] 489 / 1e-169 AT3G26020 746 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.008G180000 [exp] 488 / 3e-169 AT3G26020 711 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.017G070100 [exp] 487 / 8e-169 AT1G13460 728 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.008G179900 [exp] 485 / 3e-168 AT3G26020 731 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4) Potri.002G226200 [exp] 486 / 4e-168 AT4G15415 740 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Potri.010G054400 [exp] 477 / 2e-165 AT3G26020 730 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017752 [exp] 754 / 0 AT5G25510 628 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10010426 [exp] 719 / 0 AT5G25510 608 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10012116 [exp] 693 / 0 AT5G25510 598 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10033069 [exp] 637 / 0 AT5G25510 529 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10013141 [exp] 589 / 0 AT5G25510 780 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10008104 [exp] 556 / 0 AT5G25510 723 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1) Lus10015144 [exp] 489 / 3e-170 AT4G15415 753 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10030002 [exp] 485 / 2e-168 AT4G15415 763 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10035321 [exp] 483 / 1e-167 AT4G15415 764 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2) Lus10032082 [exp] 473 / 1e-163 AT4G15415 726 / 0.0 Protein phosphatase 2A regulatory B subunit family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01603 [poplar] [flax] B56 Protein phosphatase 2A regulatory B subunit (B56 family)
Representative CDS sequence Show only first row Show all	>Potri.018G073925.1 pacid=42801764 polypeptide=Potri.018G073925.1.p locus=Potri.018G073925 ID=Potri.018G073925.1.v4.1 annot-version=v4.1 ATGCTCAAGCAAATCCTTAGCAAAATTCCCCGCAAGTTCCCCAAATCTGATCCTTTGGATTCTACTGGGATTGATTGTGGCAATGATTCTACCTGCTCGG GGCCACCTACAAATGGTGGGAATTCTTTTTCTAGTCGGTTGAATGTTGTTAAACGGGTATCTTCAGCAGTATTTCCAGCAAGCATAATGGCTGGAATGGA GGCAGTGGATCCCCATCTATCCTTCAAAGATGTCTCAAACCTGCAGAAGCAAAACCTTTTTGTCAGTAAATTAAACCTTTGTTGCGAGGTTTCTGACTGC AGTGATCCAGATAAAAATGCTGTTCAGCAAGATCTTAAACATCAAGTGCTTATAGATCTTGTCGATTTTGTTTCATCCGGATCTGCTAAGTTTACTGAAC CCGCAATTGCTGCAATTTGTAAGATGTGTGCAAATAACCTGTTTAGGGTTTTTCCACCCAAGTATCGTACTGTTAACACAGGTGGGGAAACAGAAGATGA AGAACCAATGTTTGATCCTGCTTGGTCACATTTGCAAAGTGTGTATGATCTACTCCTTAGGTTTGTTAGTTCTGTTGATGCCAAGGCTGCCAAGAAGCAT GTTGATCATGCTTTCATTTTGAGATTACTTGAGCTTTTTGATTCTGTGGACCCAAGAGAAAGAGACTGTTTGAAAACCATTCTACATAGAATTTATGGAA AGTTCATGGTGCACCGGCCTTTTATCCGAAAAGCAGTTAGCAATATCATCTATCATTTTGTCTTTGAAACTGAACGTCATAATGGAATTGCTGAGCTGTT GGAAATTTTTGGGAGTGTTATTAGTGGGTTTGCATTGCCATTGAAAGAGGAACACAAAATTTTTCTCTGGAGGGCTTTGATTCCTCTGCACAAACCAAAA TCAGTGGGTATTTATCACCAGCAACTAACTTATTGTGTTGTACAGTTTATAGAAAAGGATCCAAGGTTGACTAGTCCTGTGATTAAGGGACTGTTGAAGT ATTGGCCTGTGACTAACAGCCAGAAGGAATTGATGTTTATAAGTGAGCTAGAAGAAATATTAGAGATGACTGGTATGGATGAGTTTCAAAAGATCATGGT CCCACTATTTCGGCGAATAAGATGCTGCCTCAATAGCTCTCATTATCAGGTGGCTGAACGAGCTCACTTGCTATGGAACAATGAACGGATCCTTAAACTT ATTGAACATAACCGTCAGGTTATTGTGCCTCTTGTCTTCTCAGCCCTTGAGCAGAACACCCTGAATCACTGGAACCAATCAGTACTTATTCAGACACAGC ATATTCGGAAGATGTTCTGTGAGATGGATGAAGAACTAGTGCTAGCCTGCCAACGTAAGTTGGAGGAGCAAGACTCTTTGTCAAGTGTGGAAGCTGAGAA GCGGAGATTGACTTGGGAGCGCCTGGAAAATGCTGCAGATCTACAACCTAGAGCTGATAATATTTTACCTGTCTCGTGCTCGGTTACCTGCTAG
AA sequence Show only first row Show all	>Potri.018G073925.1 pacid=42801764 polypeptide=Potri.018G073925.1.p locus=Potri.018G073925 ID=Potri.018G073925.1.v4.1 annot-version=v4.1 MLKQILSKIPRKFPKSDPLDSTGIDCGNDSTCSGPPTNGGNSFSSRLNVVKRVSSAVFPASIMAGMEAVDPHLSFKDVSNLQKQNLFVSKLNLCCEVSDC SDPDKNAVQQDLKHQVLIDLVDFVSSGSAKFTEPAIAAICKMCANNLFRVFPPKYRTVNTGGETEDEEPMFDPAWSHLQSVYDLLLRFVSSVDAKAAKKH VDHAFILRLLELFDSVDPRERDCLKTILHRIYGKFMVHRPFIRKAVSNIIYHFVFETERHNGIAELLEIFGSVISGFALPLKEEHKIFLWRALIPLHKPK SVGIYHQQLTYCVVQFIEKDPRLTSPVIKGLLKYWPVTNSQKELMFISELEEILEMTGMDEFQKIMVPLFRRIRCCLNSSHYQVAERAHLLWNNERILKL IEHNRQVIVPLVFSALEQNTLNHWNQSVLIQTQHIRKMFCEMDEELVLACQRKLEEQDSLSSVEAEKRRLTWERLENAADLQPRADNILPVSCSVTC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25510			Protein phosphatase 2A regulat...		Potri.018G073925 [exp]	0	1
AT3G57880			Calcium-dependent lipid-bindin...		Potri.016G049100 [exp]	2.44	0.9173
AT1G69160			unknown protein		Potri.010G154200 [exp]	2.82	0.8830
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Potri.012G065750 [exp]	3.46	0.9021
AT5G07590			Transducin/WD40 repeat-like su...		Potri.003G151400 [exp]	3.87	0.8986
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Potri.002G029100 [exp]	3.87	0.8717
AT5G53880			unknown protein		Potri.001G398700 [exp]	4.24	0.8879
AT1G01225			NC domain-containing protein-r...		Potri.014G101300 [exp]	4.58	0.9047
AT4G00752			UBX domain-containing protein ...		Potri.014G075600 [exp]	6.63	0.8798
AT1G18650		PDCB3	plasmodesmata callose-binding ...		Potri.015G057800 [exp]	7.07	0.8799
AT5G59350			unknown protein		Potri.010G206100 [exp]	7.48	0.8724

Compare expression of checked genes

Potri.018G073925 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.