Plant FIBer expression Database

Potri.018G074050 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G074050.1 pacid=42801337 polypeptide=Potri.018G074050.1.p locus=Potri.018G074050 ID=Potri.018G074050.1.v4.1 annot-version=v4.1
ATGCTTTTTCCAGTGACATCCTGCGTGTATAACTGTGTTGGCGCTGAAGCTGCCCCTTCGTCATCTTGGGTTGGCTCTGCAATGCTGGAATTTGTTGTGT
ACAAGGGGTTCTGTGGTTGCGTATTATACAGTTTATGTTGGATTGAAACCAGTCCTCTTAGGCATGATACCACTCTTTCAATCAACATGTGTACTGAGGT
TAAACTTAGTTATGGAAAGGTTGCACTGGATATGGAGGAAGGCGATTCTTCTGCTACGAAGAAAAGACGTCTTTCATCAACTTTCCAAAAAGACGTTAGT
GATTCTCCCATGGCTGAGATGTCTTCCATGTTGCGCTCACACTACTATTGTATATTGTGGTTGAAAAGACGTACAACAAACATGTATGGTGTGGAAGATC
ATATTACCGATTGGCCATAA
AA sequence
>Potri.018G074050.1 pacid=42801337 polypeptide=Potri.018G074050.1.p locus=Potri.018G074050 ID=Potri.018G074050.1.v4.1 annot-version=v4.1
MLFPVTSCVYNCVGAEAAPSSSWVGSAMLEFVVYKGFCGCVLYSLCWIETSPLRHDTTLSINMCTEVKLSYGKVALDMEEGDSSATKKRRLSSTFQKDVS
DSPMAEMSSMLRSHYYCILWLKRRTTNMYGVEDHITDWP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G074050
[exp]
0 1
AT1G13110 CYP71B7 "cytochrome P450, family 71 su... Potri.015G094900
[exp]
3.46 0.7445
AT3G03660 HD WOX11 WUSCHEL related homeobox 11 (.... Potri.019G040800
[exp]
8.24 0.7649
Potri.016G023320
[exp]
8.66 0.7549
AT5G02220 unknown protein Potri.010G201900
[exp]
13.26 0.7664
AT3G11570 TBL8 TRICHOME BIREFRINGENCE-LIKE 8 ... Potri.006G208251
[exp]
21.33 0.7371
AT4G36150 Disease resistance protein (TI... Potri.003G195450
[exp]
27.34 0.6799
AT3G22910 ATPase E1-E2 type family prote... Potri.008G159100
[exp]
28.74 0.7312 ACA13.1
AT2G23620 ATMES1 ARABIDOPSIS THALIANA METHYL ES... Potri.005G133800
[exp]
37.10 0.6917
AT1G14370 Kin1, PBL2, APK... PBS1-like 2, kinase 1, protein... Potri.009G020700
[exp]
47.41 0.7289
AT3G14470 NB-ARC domain-containing disea... Potri.017G121700
[exp]
47.74 0.6949

Potri.018G074050 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.