Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19960 202 / 3e-62 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G39260 69 / 8e-15 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT3G47120 64 / 4e-11 C3HZnF RNA recognition motif (RRM)-containing protein (.1) AT2G21660 60 / 7e-11 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT5G61030 59 / 8e-10 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT3G23830 54 / 6e-09 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT3G26420 56 / 1e-08 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT4G13850 52 / 4e-08 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT1G60650 54 / 5e-08 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT2G16940 54 / 7e-08 Splicing factor, CC1-like (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G155300 [exp] 65 / 2e-12 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.009G116400 [exp] 64 / 5e-12 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.009G044900 [exp] 62 / 1e-10 AT3G47120 276 / 8e-91 RNA recognition motif (RRM)-containing protein (.1) Potri.015G086500 [exp] 61 / 4e-10 AT4G24770 290 / 6e-97 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.001G126400 [exp] 59 / 2e-09 AT5G51300 790 / 0.0 splicing factor-related (.1.2.3) Potri.004G177000 [exp] 58 / 5e-09 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.015G057400 [exp] 55 / 1e-08 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.003G107200 [exp] 56 / 2e-08 AT5G51300 830 / 0.0 splicing factor-related (.1.2.3) Potri.012G090200 [exp] 55 / 2e-08 AT4G24770 310 / 7e-105 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017757 [exp] 289 / 7e-96 AT5G19960 227 / 7e-72 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10023569 [exp] 66 / 2e-12 AT2G21660 147 / 8e-46 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026344 [exp] 64 / 3e-12 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042320 [exp] 64 / 3e-12 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026343 [exp] 62 / 2e-11 AT4G39260 145 / 1e-45 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) Lus10018227 [exp] 64 / 3e-11 AT3G47120 298 / 1e-99 RNA recognition motif (RRM)-containing protein (.1) Lus10040454 [exp] 62 / 4e-11 AT2G21660 148 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10042321 [exp] 58 / 7e-10 AT2G21660 121 / 2e-36 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10000826 [exp] 59 / 3e-09 AT5G09880 589 / 0.0 Splicing factor, CC1-like (.1) Lus10002093 [exp] 58 / 6e-09 AT5G09880 600 / 0.0 Splicing factor, CC1-like (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.018G074100.6 pacid=42802154 polypeptide=Potri.018G074100.6.p locus=Potri.018G074100 ID=Potri.018G074100.6.v4.1 annot-version=v4.1 ATGACAATAGATGATGATAGGTCAATTTATATAGGAGGACTCCCTTACAATGCCTCTGAGGATACTCTTCGCAGAGTCTTCAATCTCTATGGCTCCATTG TCGCTGTTAAGATTATTAATAACCATGGGACAAGTGGAAAATGCTATGGCTTTGTCACTTTCAGAAATCCTAGATCTGTAATTGATGCCATCAATGACAT GAATGGCAAGACTATTGATGGTCGAGTTGTAAGAGTAAATGGAGTAACGAGTAGAAGTGGAAAATCAAATTTCACTGGAGAAGATATCCGATCTCATGTA GAGAGGGGTAGGGAAAGAGGTCGTGAAAGGGACTATGATCATGACAGGCACCGACAATGGCACAATGACAGGTCTAGAGAGCGGGATCGCTCTTGGGGCT ATGATGAAGACAGTGAAAGAGGATATGAGCATGCACGTCTTCATGATCGAGCAAGGGATGGTTTCTATGGTAGAGATCGTAGCCGAGAGAGAGAATTGGA GAATAATGAGCAAGAAAAAGAATGGAAGAGTGATAGGAATAAGGAAAGGGGTCATGATCTTGATGGGGATCGAGATTGGGAGATGGGTGGAACCAATGGC AATCCTACAATTGTTGACAAGGCCTCAGATCAGAACTCAAGGAAACTGAATGGTTCCATATATAATGACCAGCATAAAAGGGAAATTTCATCATATTCAA GTGATGATTACCATGATGAGGTGAAGGAAAAATTTGAGAAATCAACTAAGACGCATGATGAACTTAAAAACAAGGTTTCTCATATGGAGGAGAGGTTGGA AAATAAACAGCAATTTGTTTCAGATTTACAGAAAAAAGCTCTGATATTAGAGGGTGCTTTGCTGACTGCAAAGAAGCTCTCCTTGCAACGTAGGATGCAG TTGACCAAGCTACAAAAATGTTTTCTGCAAGTGAAAGAATACACCAACAGACTTAAAAGCTGTGAACAGGAACTTAAGTCTGTCGTTGACTCAGCAATGA TAGAGAGTGAAATGGGCGATGATACTGCCACAAGGGATGGAATCATAACTATTGTATAA
AA sequence Show only first row Show all	>Potri.018G074100.6 pacid=42802154 polypeptide=Potri.018G074100.6.p locus=Potri.018G074100 ID=Potri.018G074100.6.v4.1 annot-version=v4.1 MTIDDDRSIYIGGLPYNASEDTLRRVFNLYGSIVAVKIINNHGTSGKCYGFVTFRNPRSVIDAINDMNGKTIDGRVVRVNGVTSRSGKSNFTGEDIRSHV ERGRERGRERDYDHDRHRQWHNDRSRERDRSWGYDEDSERGYEHARLHDRARDGFYGRDRSRERELENNEQEKEWKSDRNKERGHDLDGDRDWEMGGTNG NPTIVDKASDQNSRKLNGSIYNDQHKREISSYSSDDYHDEVKEKFEKSTKTHDELKNKVSHMEERLENKQQFVSDLQKKALILEGALLTAKKLSLQRRMQ LTKLQKCFLQVKEYTNRLKSCEQELKSVVDSAMIESEMGDDTATRDGIITIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19960			RNA-binding (RRM/RBD/RNP motif...		Potri.018G074100 [exp]	0	1
AT5G50380		ATEXO70F1	exocyst subunit exo70 family p...		Potri.015G094800 [exp]	1.00	0.9028
ATCG00820		ATCG00820.1, RP...	ribosomal protein S19 (.1)		Potri.013G137688 [exp]	19.67	0.8954
AT1G65280			DNAJ heat shock N-terminal dom...		Potri.019G083700 [exp]	21.16	0.8742
AT2G34500		CYP710A1	cytochrome P450, family 710, s...		Potri.004G131700 [exp]	22.24	0.8945	CYP710.1
ATCG00820		ATCG00820.1, RP...	ribosomal protein S19 (.1)		Potri.005G154674 [exp]	22.71	0.8953
ATCG01310		ATCG01310.1, RP...	ribosomal protein L2 (.1)		Potri.011G074401 [exp]	28.35	0.8921
AT3G05670			RING/U-box protein (.1)		Potri.013G011400 [exp]	31.74	0.8857
AT2G25720			unknown protein		Potri.004G068400 [exp]	32.00	0.8579
ATCG00820		ATCG00820.1, RP...	ribosomal protein S19 (.1)		Potri.011G074301 [exp]	33.46	0.8903
AT3G26980		MUB4	membrane-anchored ubiquitin-fo...		Potri.001G325900 [exp]	34.59	0.8841	Pt-ATGP4.2

Compare expression of checked genes

Potri.018G074100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.