Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26730 550 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G58300 412 / 2e-135 Leucine-rich repeat protein kinase family protein (.1.2) AT3G08680 372 / 2e-120 Leucine-rich repeat protein kinase family protein (.1.2) AT4G23740 362 / 2e-116 Leucine-rich repeat protein kinase family protein (.1) AT1G68400 345 / 1e-109 leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G05160 342 / 1e-108 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G48480 338 / 5e-107 RKL1 receptor-like kinase 1 (.1) AT3G17840 325 / 2e-102 RLK902 receptor-like kinase 902 (.1) AT3G02880 306 / 2e-95 Leucine-rich repeat protein kinase family protein (.1) AT2G36570 306 / 6e-95 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G158800 [exp] 417 / 5e-138 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 415 / 5e-137 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 402 / 3e-132 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 399 / 3e-130 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.015G035500 [exp] 364 / 3e-117 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.001G095200 [exp] 363 / 5e-117 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G044600 [exp] 362 / 2e-116 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.015G023500 [exp] 362 / 3e-116 AT4G23740 637 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G136100 [exp] 361 / 3e-116 AT4G23740 769 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017756 [exp] 795 / 0 AT2G26730 877 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033065 [exp] 686 / 0 AT2G26730 768 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031350 [exp] 427 / 7e-142 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10035012 [exp] 423 / 5e-140 AT5G58300 867 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10021673 [exp] 419 / 2e-138 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 407 / 2e-133 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10034446 [exp] 405 / 3e-133 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033936 [exp] 373 / 3e-121 AT4G23740 738 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032351 [exp] 370 / 2e-119 AT4G23740 802 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10002299 [exp] 353 / 2e-117 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G074300.1 pacid=42801499 polypeptide=Potri.018G074300.1.p locus=Potri.018G074300 ID=Potri.018G074300.1.v4.1 annot-version=v4.1 ATGTCATTAATTTTTGACTCTCTTACTGTCATCCTTGTTTCTTTTCTGCTATTACTGAGTCATGGCCGAGTTGACTCTGAGCCTGTACAAGACAAGCAAG CTCTCCTTGCCTTTCTTTCTAAAGTTCCTCACGAGAATCGCCTTCAATGGAACGCTTCTGCCTCCGTCTGTACCTGGTTCGGGATCGAGTGCGATGCTAA CCAATCTTTCGTGTATTCTCTCCGGCTTCCCGGTGTTGGGCTCATAGGCTCCATTCCGCCAAACACACTTGGCAGGATGAGTCAGCTCCGAGTCTTGAGT CTTCGCTCAAACCGTCTCTCCGGTGAGATCCCCTCAGATTTCTCTAATTTAACCCTCCTCCGGAGCCTGTATCTCCAAAACAATGTGTTTACGGGTGATT TTCCTCCGAGCTTGACTCGATTAACTCGGTTATCTCGTCTTGATCTCTCGTCAAACAACTTCACCGGTTCAATCCCATTTTCTGTCAACAATTTGACCCA CTTGACAGGGCTTCTTTTGCAGAACAACCATTTCGCGGGTAGCTTGCCAAGTGTAAACCCGTTAAATTTGACAGATTTTAATGTTTCCAACAACAGTCTA AACGGTTCAATCCCTCAAGTTTTGGCCAAGTTCCCTGCATCCTCTTTTTCTGGGAATTTACAACTTTGTGGTCGCCCATTACCGCCTTGCAACCCATTTT TCCCATCTCCAGCTCCGTCCCCATCAGAAATCCCACCTGGGCCTCCATCATCGCACAAAAAGTCCAGGAAACTTTCCACGGTTGCCATTGTTTTAATCGC AGTGGGCTCTGCTTTAGTTGCTCTGTTATTGTTGCTCTTTTTGATTTTATGTCTCCGGAGGAAACAACGGAGTCGGCCCGCGAAAACCCCAAAGCCAACA GCGACGGCACGCGCTGTGGCAGTGGAGGCAGGGACATCATCGTCAAAGGATGATATCACTGGTGGGTCAGCGGAGGCTGAGAGGAACAAGCTGGTGTTTT TCGAAGGAGGGATTTACAGCTTCGATTTGGAGGATTTATTGAGGGCATCTGCGGAGGTATTGGGGAAAGGAAGTGTGGGGACTTCATACAAGGCTGTGTT GGAGGAAGGGACTACTGTGGTGGTGAAGAGGTTGAAGGATGTGGTGGTTACCAAGAGAGATTTCGAGACTCAAATGGAGGTTTTGGGCAAGATTAAGCAT GATAATGTGGTTCCATTAAGAGCTTACTATTATTCAAAAGATGAGAAGTTGCTTGTTTCTGATTTCATGCCCGTCGGTAGCTTGTCTGCTCTTCTTCACG GTAGTCGAGGGTCAGGCCGCACTCCCCTAGACTGGGATAACCGGATGAGAATAGCAATGAGTACAGCAAGAGGTCTTGCTCACCTCCACATTGCGGGCAA GGTGATTCATGGCAACATCAAATCGTCCAACATTCTACTCCGACCTGACAATGACGCTTGCGTTTCAGATTACGGGCTCAACCCGCTCTTTGGTACCTCT ACGCCACCTAGCCGAGTCGCAGGCTATCGCGCCCCAGAAGTGGTAGAAACCCGCAAAGTTACCTTCAAATCCGATGTGTACAGTTTCGGTGTGTTGCTCC TTGAGCTCCTAACAGGCAAAGCACCCAATCAAGCCTCATTAGGCGAAGAAGGTATTGATTTGCCCAGGTGGGTCCAGTCAGTGGTTCGTGAGGAATGGAC TGCTGAGGTCTTTGACGTGGAGTTGATGAGGTACCATAACATTGAGGAGGAAATGGTGCAGTTGTTGCAGATAGCAATGGCTTGTGTCTCCACTGTACCT GATCAAAGACCAGCAATGCAAGAGGTTGTAAGGATGATCGAGGATATGAATAGGGGAGAGACGGATGATGGATTACGGCAATCATCTGATGATCCATCTA AAGGATCCGAGAGCCATACTCCTCCACCAGAGTCCAGGACGCCTCCTAGCACTGTCACACCATAG
AA sequence Show only first row Show all	>Potri.018G074300.1 pacid=42801499 polypeptide=Potri.018G074300.1.p locus=Potri.018G074300 ID=Potri.018G074300.1.v4.1 annot-version=v4.1 MSLIFDSLTVILVSFLLLLSHGRVDSEPVQDKQALLAFLSKVPHENRLQWNASASVCTWFGIECDANQSFVYSLRLPGVGLIGSIPPNTLGRMSQLRVLS LRSNRLSGEIPSDFSNLTLLRSLYLQNNVFTGDFPPSLTRLTRLSRLDLSSNNFTGSIPFSVNNLTHLTGLLLQNNHFAGSLPSVNPLNLTDFNVSNNSL NGSIPQVLAKFPASSFSGNLQLCGRPLPPCNPFFPSPAPSPSEIPPGPPSSHKKSRKLSTVAIVLIAVGSALVALLLLLFLILCLRRKQRSRPAKTPKPT ATARAVAVEAGTSSSKDDITGGSAEAERNKLVFFEGGIYSFDLEDLLRASAEVLGKGSVGTSYKAVLEEGTTVVVKRLKDVVVTKRDFETQMEVLGKIKH DNVVPLRAYYYSKDEKLLVSDFMPVGSLSALLHGSRGSGRTPLDWDNRMRIAMSTARGLAHLHIAGKVIHGNIKSSNILLRPDNDACVSDYGLNPLFGTS TPPSRVAGYRAPEVVETRKVTFKSDVYSFGVLLLELLTGKAPNQASLGEEGIDLPRWVQSVVREEWTAEVFDVELMRYHNIEEEMVQLLQIAMACVSTVP DQRPAMQEVVRMIEDMNRGETDDGLRQSSDDPSKGSESHTPPPESRTPPSTVTP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26730			Leucine-rich repeat protein ki...		Potri.018G074300 [exp]	0	1
AT4G23740			Leucine-rich repeat protein ki...		Potri.003G136100 [exp]	4.35	0.8928
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Potri.009G140100 [exp]	4.69	0.8517
AT3G11950		ATHST	TRAF-like superfamily protein ...		Potri.016G062900 [exp]	5.29	0.8482
AT3G17240		mtLPD2, LPD2	lipoamide dehydrogenase 2 (.1....		Potri.010G151400 [exp]	7.87	0.8635	LPD2
AT2G26110			Protein of unknown function (D...		Potri.018G053000 [exp]	8.48	0.8494
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.008G190000 [exp]	10.48	0.8521
AT5G58300			Leucine-rich repeat protein ki...		Potri.019G062100 [exp]	16.97	0.8601
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.003G161700 [exp]	17.32	0.8597	CYP51G5,CYP51.1
AT4G13710			Pectin lyase-like superfamily ...		Potri.001G052300 [exp]	17.43	0.8469
AT4G33220		PME44, ATPME44	A. THALIANA PECTIN METHYLESTER...		Potri.006G134500 [exp]	20.39	0.8321

Compare expression of checked genes

Potri.018G074300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.