Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26910 2293 / 0 PEC1, ABCG32, PDR4, ATPDR4 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) AT1G15520 1713 / 0 ATABCG40, ABCG40, PDR12, ATPDR12 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) AT1G66950 1626 / 0 ABCG39, PDR11, ATPDR11 ATP-binding cassette G39, pleiotropic drug resistance 11 (.1) AT2G36380 1607 / 0 ABCG34, PDR6, ATPDR6 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) AT3G16340 1576 / 0 ABCG29, ATPDR1, PDR1, AtABCG29 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) AT1G15210 1543 / 0 ABCG35, PDR7, ATPDR7 ATP-binding cassette G35, pleiotropic drug resistance 7 (.1) AT1G59870 1523 / 0 ATABCG36, ABCG36, PEN3, PDR8, ATPDR8 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1) AT2G29940 1415 / 0 ABCG31, PDR3, ATPDR3 ATP-binding cassette G31, pleiotropic drug resistance 3 (.1) AT2G37280 1350 / 0 ABCG33, PDR5, ATPDR5 ATP-binding cassette G33, pleiotropic drug resistance 5 (.1) AT3G53480 1348 / 0 PIS1, ABCG37, PDR9, ATPDR9 polar auxin transport inhibitor sensitive 1, ATP-binding cassette G37, pleiotropic drug resistance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G032900 [exp] 1800 / 0 AT1G15520 2041 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.006G248500 [exp] 1778 / 0 AT1G15520 2050 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048700 [exp] 1758 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048800 [exp] 1748 / 0 AT1G15520 2034 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G179000 [exp] 1748 / 0 AT1G15520 2010 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G178900 [exp] 1740 / 0 AT1G15520 2000 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G048900 [exp] 1729 / 0 AT1G15520 2055 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.001G175700 [exp] 1724 / 0 AT1G15520 2058 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Potri.003G183200 [exp] 1677 / 0 AT1G15520 2031 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019453 [exp] 2439 / 0 AT2G26910 2354 / 0.0 PERMEABLE CUTICLE 1, ATP-binding cassette G32, pleiotropic drug resistance 4 (.1) Lus10008090 [exp] 1725 / 0 AT1G15520 2045 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041668 [exp] 1707 / 0 AT1G15520 2128 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024061 [exp] 1678 / 0 AT1G15520 2139 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10024060 [exp] 1644 / 0 AT1G15520 2115 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10034020 [exp] 1609 / 0 AT1G15520 2029 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10041683 [exp] 1588 / 0 AT1G15520 2019 / 0.0 Arabidopsis thaliana ATP-binding cassette G40, ATP-binding cassette G40, pleiotropic drug resistance 12 (.1) Lus10008984 [exp] 1554 / 0 AT2G36380 2007 / 0.0 ATP-binding cassette G34, pleiotropic drug resistance 6 (.1) Lus10014150 [exp] 1551 / 0 AT3G16340 2221 / 0.0 ATP-binding cassette G29, pleiotropic drug resistance 1 (.1.2) Lus10025824 [exp] 1539 / 0 AT1G59870 2220 / 0.0 PENETRATION 3, ARABIDOPSIS PLEIOTROPIC DRUG RESISTANCE 8, Arabidopsis thaliana ATP-binding cassette G36, ATP-binding cassette G36, ABC-2 and Plant PDR ABC-type transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter CL0181 [poplar] [flax] PF08370 [poplar] [flax] PDR_assoc Plant PDR ABC transporter associated CL0181 [poplar] [flax] PF14510 [poplar] [flax] ABC_trans_N ABC-transporter N-terminal
Representative CDS sequence Show only first row Show all	>Potri.018G074500.4 pacid=42801440 polypeptide=Potri.018G074500.4.p locus=Potri.018G074500 ID=Potri.018G074500.4.v4.1 annot-version=v4.1 ATGTGGAATTCGGCTGAAAATGCGTTTACGAGAACGGCGTCGTTTAGGGAGGGGGGAGAGGACGAGGAGGCGCTTCGATGGGCGGCGCTCGAGCGCCTGC CTACTTATGCTCGAGTACGGAGAGGCATTTTCAAGAATGTTGTTGGTGATCATAAAGAGATGGATCTAAGTGAGCTCGGGGCACAAGAGCAGAAGCTCGT GCTTGAGCGCTTGGTTAGCTCTGTCGATGAAGACCCTGAGCGATTCTTTGACAGGATGCGAAAGCGACTTGATGCAGTACGTTTGGAATTTCCAAAGATT GAGGTTCGTGTTCAGAATGTGACTGTCGAATCTTTTGTCCATGTGGGAAGTAGGGCCCTCCCAACCATCCCCAACTTTGTTTTCAACATGACCGAGGCGC TTTTAAGGCAATTGCGGATATATAGAGGAAACAGAAGCAAGCTAACCATTTTGGATGATGTTAGTGGGATTATAAGGCCTTCTAGATTGACCCTCCTATT GGGGCCTCCAAGCTCTGGAAAGACAACACTACTCTTAGCTCTTGCTGGACGTCTTGGAAATGATTTGCAGATGTCTGGGAAAATTACTTATAATGGACAC AGTCTAAATGAGTTTGTTGCTCCGAGGACTTCGGCATATGTCAGTCAGCATGATTGGCATGTGGCTGAGATGACTGTAAAAGAAACTCTAGAGTTTGCAG GATGCTGCCAAGGTGTTGGTTCCAAATATGATATGCTTTTGGAGCTTGCAAGAAGAGAGAAGTTCGCAGGGATAAAGCCTGATGAAGATCTTGATATATT TATGAAGTCATTAGCTTTGGGGGGACAGGAGACTAACCTGGTGGTGGAGTACATAATGAAGATTTTAGGTTTGGACATATGTGCTGACACATTGGTTGGT GATGAAATGCTTAAAGGGATCTCGGGGGGGCAGAAGAAGCGACTTACAACAGGTGAATTACTAGTTGGTCCGGCTAGAGTGCTGTTCATGGATGAAATAT CCAACGGGCTCGATAGTTCTACTACATATCAAATCATCAAATATTTAAGGCATTCAACCCGTGCACTTGATGGTACCACTGTCATTTCTTTGCTGCAACC TGCACCCGAGACATACGAACTATTTGATGATGTTATGCTCTTATGTGAGGGCCAGATTGTTTACCAGGGACCCCGTGATGCAGCTCTAGATTTCTTTTCA TCTATGGGATTTAGCTGCCCTGAGAGAAAGAACGTGGCAGACTTCTTGCAAGAAGTTATTTCAAAGAAGGACCAAGAGCAGTACTGGTCTGTTCCCAATC GCCCTTATCGGTACATACCTCCGAGGAAGTTTGTTGAAGCTTTTCACTCATTTCTTGTTGGTCGAAGTTTGTCTGAGGAACTGGCAGTTCCTTTTGACAA ACGTTACAATCATCCAGCAGCTTTGTCAACTTCTAAGTTCGGTGTAAAACAGAGTGAGCTTTTCAGGATCTGCTTTAACTGGCAGAAGCTTCTAATGAAA CGGAATTCATTTATATATGTATTCAAATTTATTCAGCTTCTTCTTGTTGCATTGATCACAATGAGCGTTTTTTTCCGCTCAACCATGCATCGTGACACGA TTTATGATGGAGGTTTATTTGTTGGGTCCATATACTTCTCCATGGTCATTATTCTTTTTAATGGCTTTACGGAGGTTTCAATGCTGGTAGCCAAGCTTCC AGTGCTCTACAAGCATAGGGATTTGCGCTTCTACCCCAGCTGGGCATACACACTTCCTTCTTGGGTCTTAAGTATTCCAATTTCACTCATGGAATCTGGT CTCTGGGTGGCAGTCACATACTATGTGATTGGATATGATCCTAATATTACCAGATTTTTTCGGCAGTTTTTGTTGTATTTCTTTCTGCACCAAATGTCTA TAGCTCTCTTTCGTGTAATTGGATCCTTGGGCCGTCATATGATAGTTGCCAACACCTTTGGATCTTTTGCTATGTTGGTTGTAATGGCTCTTGGAGGATA CATCATTTCGAGAGATTATATCCCAAGCTGGTGGATATGGGGTTTCTGGGTTTCTCCTTTGATGTATGCTCAAAATGCAGCATCAGTGAATGAATTCCTT GGGCATTCTTGGGATAAGAGAGCTGGGAACAACACAGACTTTTCATTAGGTGAGGCACTACTGAGAGCACGCAGTTTATTTCCAGAAAGCTACTGGTATT GGATTGGAATTGCTGCTCTGCTTGGATATACAGTTCTATTCAATCTTCTGTTCACATTCTTCCTAGCATACCTTAATCCTTTGGGGAAGCATCAAGCTGT GGTTTCCAAGGAGGAGCTGCAAGAGAGAGACAAGAGAAGGAAAGGAGAAAATGTTGTTATTGAACTGAGGGAGTACTTGCAGCATTCTGGCTCACTGAAT GGAAAATATTTCAAGCCGAGAGGCATGGTTCTACCATTTCAGCCTCTTTCCATGTCTTTCAGCAATATCAATTACTTTGTGGACGTCCCTGTGGAGCTGA AGCAACAAGGGATAGTAGAAGACAGATTGCAGTTGTTGGTTAATGTTACTGGAGCATTTAGGCCTGGTGTGCTTACAGCACTGGTTGGAGTCAGTGGTGC TGGAAAAACCACCCTCATGGATGTTTTAGCTGGTAGAAAAACTGGAGGGATCATAGAAGGGAACATACATATATCTGGTTATCCCAAAAAGCAAGAGACG TTTGCAAGAGTTTCTGGTTACTGTGAGCAAAATGATATTCATTCTCCATGTTTAACTGTTCTTGAATCGCTTCTTTTCTCGGCCTGGCTTCGGTTACCAA CAGTAGTTAACATGGATACACAGCAGGCATTTGTTGAGGAGGTTATGGAACTTGTGGAGCTTACTCCATTAAGTGGAGCACTGGTTGGTCTACCTGGAGT CAATGGTTTATCAACAGAACAACGGAAAAGGTTAACAATTGCTGTTGAATTGGTTGCTAACCCATCCATAGTGTTCATGGATGAGCCCACCTCAGGGTTG GATGCAAGAGCTGCAGCCATTGTGATGAGAACTGTGAGGAATATAGTAAACACTGGACGGACAATTGTTTGCACAATCCATCAGCCAAGCATAGACATTT TTGAATCCTTTGATGAGCTTTTGTTTATGAAGCGTGGAGGAGAGCTAATATATGCTGGTCCTCTTGGCCCAAGGTCTTGTGAGCTCATCAAGTATTTTGA GGCAGTTGAAGGAGTGCCAAAGATTAGACATGGATATAACCCTGCTGCCTGGATGCTTGAGGTTACTTCTTCAGCGGAAGAAACCCGTCTAGGTGTGGAC TTTGCTGAAATTTACCGAAGATCAAATCTACATCAACGTAATAGGGAGTTGGTTGAAAATTTAAGCAAGCCAAACAGTAGTGCGAAAGACTTGAACTTTC CAACCAAGTACTGTCAGTCATTTTTTGACCAGTTATTAGCCTGCCTTTGGAAGCAAAATCTATCTTACTGGCGAAACCCACAATACACTGCAGTCCGCTT CTTCTATACTGTGATCATTTCATTAATGCTTGGGACAATATGTTGGAGATTTGGTTCCAAAAGGGAGAATGTGCAAGAATTATTCAATGCAATGGGATCC ATGTATGCGGCTGTCCTATTTATTGGAATAACCAATGCATCTGCTGTTCAACCTGTTGTTTCTGTTGAAAGATTTGTTTCATATCGAGAGAGAGCTGCAG GGATGTACTCAGCTCTACCGTTCGCCTTTGCGCAGGTTGTTATTGAATTCCCTTACGTGTTTGGACAAACAATTATATACTGCACAATTTTCTACTCCAT GGCATCATTTGACTGGACTGCTTTGAAGTTTATTTGGTACTCTTTCTTCATGTATTTTACCATGCTATACTTCACCTTTTATGGAATGATGACGACAGCA CTCACACCAAATCACAACGTGGCTTCCATCATTGCTGCTCCATTTTATATGCTTTGGAACCTTTTCAGTGGCTTTATGATTCCTCACAAGAGAATTCCCA TATGGTGGAGCTGGTACTACTGGGCAAACCCAATAGCCTGGACTCTTTACGGTCTCTTGATTTCCCAGTATGGCAATGATAATAAACTAATGAAGCTCTC CGAAGGGGATCGCTTGTTGCCTGTGAAGCAAGTTCTTCAGGAAGTGTTTGGATACAGGCATGATTTCTTAGGTGTCGCTGGTCTTATGGTGGTTGGATTC TGCGTGCTTTTTGGAGTGATTTTCGCTTTTGCAATAAAAGCCTTCAATTTCCAAAGGAGATAA
AA sequence Show only first row Show all	>Potri.018G074500.4 pacid=42801440 polypeptide=Potri.018G074500.4.p locus=Potri.018G074500 ID=Potri.018G074500.4.v4.1 annot-version=v4.1 MWNSAENAFTRTASFREGGEDEEALRWAALERLPTYARVRRGIFKNVVGDHKEMDLSELGAQEQKLVLERLVSSVDEDPERFFDRMRKRLDAVRLEFPKI EVRVQNVTVESFVHVGSRALPTIPNFVFNMTEALLRQLRIYRGNRSKLTILDDVSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGNDLQMSGKITYNGH SLNEFVAPRTSAYVSQHDWHVAEMTVKETLEFAGCCQGVGSKYDMLLELARREKFAGIKPDEDLDIFMKSLALGGQETNLVVEYIMKILGLDICADTLVG DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLRHSTRALDGTTVISLLQPAPETYELFDDVMLLCEGQIVYQGPRDAALDFFS SMGFSCPERKNVADFLQEVISKKDQEQYWSVPNRPYRYIPPRKFVEAFHSFLVGRSLSEELAVPFDKRYNHPAALSTSKFGVKQSELFRICFNWQKLLMK RNSFIYVFKFIQLLLVALITMSVFFRSTMHRDTIYDGGLFVGSIYFSMVIILFNGFTEVSMLVAKLPVLYKHRDLRFYPSWAYTLPSWVLSIPISLMESG LWVAVTYYVIGYDPNITRFFRQFLLYFFLHQMSIALFRVIGSLGRHMIVANTFGSFAMLVVMALGGYIISRDYIPSWWIWGFWVSPLMYAQNAASVNEFL GHSWDKRAGNNTDFSLGEALLRARSLFPESYWYWIGIAALLGYTVLFNLLFTFFLAYLNPLGKHQAVVSKEELQERDKRRKGENVVIELREYLQHSGSLN GKYFKPRGMVLPFQPLSMSFSNINYFVDVPVELKQQGIVEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGNIHISGYPKKQET FARVSGYCEQNDIHSPCLTVLESLLFSAWLRLPTVVNMDTQQAFVEEVMELVELTPLSGALVGLPGVNGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGPRSCELIKYFEAVEGVPKIRHGYNPAAWMLEVTSSAEETRLGVD FAEIYRRSNLHQRNRELVENLSKPNSSAKDLNFPTKYCQSFFDQLLACLWKQNLSYWRNPQYTAVRFFYTVIISLMLGTICWRFGSKRENVQELFNAMGS MYAAVLFIGITNASAVQPVVSVERFVSYRERAAGMYSALPFAFAQVVIEFPYVFGQTIIYCTIFYSMASFDWTALKFIWYSFFMYFTMLYFTFYGMMTTA LTPNHNVASIIAAPFYMLWNLFSGFMIPHKRIPIWWSWYYWANPIAWTLYGLLISQYGNDNKLMKLSEGDRLLPVKQVLQEVFGYRHDFLGVAGLMVVGF CVLFGVIFAFAIKAFNFQRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26910		PEC1, ABCG32, P...	PERMEABLE CUTICLE 1, ATP-bindi...		Potri.018G074500 [exp]	0	1
AT2G45970		CYP86A8, LCR	LACERATA, "cytochrome P450, fa...		Potri.014G085800 [exp]	1.41	0.9659	Pt-CYP86.6
AT1G49430		LRD2, LACS2	LATERAL ROOT DEVELOPMENT 2, lo...		Potri.009G109900 [exp]	6.00	0.9257	Pt-LACS2.2
AT2G42840		PDF1	protodermal factor 1 (.1)		Potri.005G200900 [exp]	9.59	0.9418
AT5G04820	OFP	ATOFP13, OFP13	ARABIDOPSIS THALIANA OVATE FAM...		Potri.016G072900 [exp]	10.95	0.9250
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Potri.019G024400 [exp]	13.63	0.9460
AT1G52340		SIS4, SDR1, ISI...	SHORT-CHAIN DEHYDROGENASE REDU...		Potri.006G206500 [exp]	13.85	0.9188	CTS2.11
AT5G22430			Pollen Ole e 1 allergen and ex...		Potri.009G019300 [exp]	15.74	0.9363
AT1G74670		GASA6	GA-stimulated Arabidopsis 6, G...		Potri.001G254100 [exp]	18.81	0.9379
AT3G03190		ATGSTF6, ATGSTF...	ARABIDOPSIS GLUTATHIONE-S-TRAN...		Potri.002G015100 [exp]	19.13	0.8887
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.019G093900 [exp]	19.67	0.9443

Compare expression of checked genes

Potri.018G074500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.