Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24503 751 / 0 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT1G23800 573 / 0 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G48000 569 / 0 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT3G48170 375 / 2e-125 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT1G74920 361 / 5e-120 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 295 / 1e-93 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT2G14170 210 / 1e-61 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT3G66658 186 / 2e-52 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT1G54100 171 / 3e-47 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2) AT2G24270 167 / 5e-46 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G074100 [exp] 584 / 0 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.012G078700 [exp] 572 / 0 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.002G189900 [exp] 570 / 0 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.012G075600 [exp] 366 / 9e-122 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.015G070600 [exp] 365 / 2e-121 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.010G174000 [exp] 300 / 6e-96 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.001G283100 [exp] 207 / 3e-60 AT2G14170 891 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.001G242333 [exp] 206 / 7e-60 AT2G14170 895 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3) Potri.009G078600 [exp] 196 / 5e-56 AT2G14170 893 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023626 [exp] 794 / 0 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10023625 [exp] 768 / 0 AT3G24503 749 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10024259 [exp] 764 / 0 AT3G24503 745 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10029166 [exp] 570 / 0 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10012999 [exp] 569 / 0 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10019387 [exp] 567 / 0 AT3G24503 548 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10043245 [exp] 524 / 0 AT3G24503 487 / 2e-170 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) Lus10042149 [exp] 347 / 2e-114 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10034115 [exp] 346 / 6e-113 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10043470 [exp] 329 / 1e-107 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [poplar] [flax] ALDH-like PF00171 [poplar] [flax] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Potri.018G075000.5 pacid=42800696 polypeptide=Potri.018G075000.5.p locus=Potri.018G075000 ID=Potri.018G075000.5.v4.1 annot-version=v4.1 ATGGGTAGTTATATCGAAGAAAACTCTGCTTCTCCAGTCAAACTGCCAACGATAAAGTTCACCAAACTATTCATCAATGGAGAATTTGTAGATTCAGTTT CAGGTAAAACTTTCGAGACGATCGACCCAAGAACAGGAGAGGTTATAGCTAGAGTTGCAGAAGGAGATAAAGAGGACGTGGATTTGGCTGTGAAGGCTGC CCGCCAGGCATTTGATGACGGTCCCTGGCCTCGCATGTCTGGTGCTGAAAGAGGAAGGATTATGATGAAATACGCAGACTTAATTGATGAGCATATAGAA GAGTTAGCTGCGCTGGACGCTATTGATGCTGGGAAGTTGTTTAGCGGGGGCAAAGCTGTGGACATCCCGAATGTAGCACGTCTACTACGTTATTATGCAG GTGCAGCTGATAAAATTCATGGGGAAGTGTTGAAAATGTCACGCGAGCTTCATGGATACACGCTGCGTGAACCCATTGGTGTTTCAGGGCATATCATTCC CTGGAACTTCCCTAGCTCCATGTTCTTCATGATGTCAGCCCCAGCCTTAGCTGCCGGGTGCACCATGATTGTAAAACCAGCCGAGCAAACACCTCTTTCG GCTCTATTTTATGGTCATCTAGCCAAGCAGGCAGGAATGCCTGATGGAGTGATCAATGTAATAACCGGATATGGACCAACGGCTGGTGCTGCCATTGCAT CTCATATGGACGTTGACAAGGTATGTTTTACAGGGTCTACCGAAGTTGGACGGAAAATAATGCAGGCTGCAGCAACAAGCAACTTGAAACAAGTTTCACT TGAATTAGGAGGCAAATCACCTCTCCTAATTTTTGACGATGCTGATGTAGATAAAGCTGCAGATCTTGCTCTCCTTGGCATCCTGTATAACAAGGGAGAA ATTTGCGTCGCGAGTTCCCGTGTTTTTGTTCAGGAAGGGATTTATGATGAATTTGTAAAGAAGTTGAAGGAGAAGGCAAAAGATTGGGTAGTTGGGGATC CTTTTGATCCAAGGTCTCGCCTAGGTCCACAGGTTGATAAGCAGCAGTTTGATAAAATTCTTTCGTACATCGAGCATGGAAAACGAGAAGGGGCCTCTTT GTTAACAGGTGGTAAACCTGTAGGCAAGAAGGGATATTTCATTGAGCCTACAGTTTTCACAGATGTTAAGGAGGACATGATGATAGCAACAGATGAGATT TTTGGACCGGTAATGTCACTCATGAAGTTCAAGACAATTGACGAGGCAATTAAGAAGGCAAACAACACAAAATATGGCCTTGCAGCTGGTATTGTTACCA AGAACTTGGATGTAGCTAATACTGTGTCGAGATCCATCCGCGCAGGCACCATTTGGATCAACTGCTACTTCGCGTTTGATAACGACTGCTCGTATGGAGG ATACAAGATGAGTGGATTTGGAAGGCATCTTGGAATGGAAGCCCTTCATAAGTTCCTTCAGGTCAAGTCTGTTGTTACCCCCATATACAACTCCCCTTGG CTATGA
AA sequence Show only first row Show all	>Potri.018G075000.5 pacid=42800696 polypeptide=Potri.018G075000.5.p locus=Potri.018G075000 ID=Potri.018G075000.5.v4.1 annot-version=v4.1 MGSYIEENSASPVKLPTIKFTKLFINGEFVDSVSGKTFETIDPRTGEVIARVAEGDKEDVDLAVKAARQAFDDGPWPRMSGAERGRIMMKYADLIDEHIE ELAALDAIDAGKLFSGGKAVDIPNVARLLRYYAGAADKIHGEVLKMSRELHGYTLREPIGVSGHIIPWNFPSSMFFMMSAPALAAGCTMIVKPAEQTPLS ALFYGHLAKQAGMPDGVINVITGYGPTAGAAIASHMDVDKVCFTGSTEVGRKIMQAAATSNLKQVSLELGGKSPLLIFDDADVDKAADLALLGILYNKGE ICVASSRVFVQEGIYDEFVKKLKEKAKDWVVGDPFDPRSRLGPQVDKQQFDKILSYIEHGKREGASLLTGGKPVGKKGYFIEPTVFTDVKEDMMIATDEI FGPVMSLMKFKTIDEAIKKANNTKYGLAAGIVTKNLDVANTVSRSIRAGTIWINCYFAFDNDCSYGGYKMSGFGRHLGMEALHKFLQVKSVVTPIYNSPW L

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24503		ALDH1A, REF1, A...	REDUCED EPIDERMAL FLUORESCENCE...		Potri.018G075000 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125401 [exp]	5.83	0.9470
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.002G149300 [exp]	12.60	0.9456
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125000 [exp]	16.24	0.9430
AT2G35930		PUB23	plant U-box 23 (.1)		Potri.002G174500 [exp]	17.08	0.9456
AT5G27690			Heavy metal transport/detoxifi...		Potri.014G132000 [exp]	17.49	0.9338
AT2G37050			Leucine-rich repeat protein ki...		Potri.007G004700 [exp]	18.16	0.9443
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Potri.003G119100 [exp]	18.33	0.9276	Pt-ANS.2
AT1G34580			Major facilitator superfamily ...		Potri.002G095900 [exp]	18.81	0.9130	HT1.1
AT1G06840			Leucine-rich repeat protein ki...		Potri.016G140101 [exp]	19.18	0.9351
AT2G01170		BAT1	bidirectional amino acid trans...		Potri.007G100700 [exp]	20.19	0.9406

Compare expression of checked genes

Potri.018G075000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.