Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19610 1796 / 0 GNL2 GNOM-like 2 (.1) AT1G13980 898 / 0 VAN7, EMB30, GN VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) AT5G39500 788 / 0 GNL1, ERMO1 ENDOPLASMIC RETICULUM MORPHOLOGY 1, GNOM-like 1 (.1) AT1G01960 228 / 4e-60 EDA10 embryo sac development arrest 10, SEC7-like guanine nucleotide exchange family protein (.1) AT4G38200 222 / 2e-58 SEC7-like guanine nucleotide exchange family protein (.1) AT3G60860 217 / 9e-57 SEC7-like guanine nucleotide exchange family protein (.1) AT4G35380 200 / 2e-51 SEC7-like guanine nucleotide exchange family protein (.1) AT3G43300 171 / 1e-42 BEN1, ATMIN7 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G078900 [exp] 909 / 0 AT1G13980 2416 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.017G078800 [exp] 830 / 0 AT1G13980 2180 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Potri.004G208400 [exp] 241 / 2e-64 AT4G38200 2354 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.002G149200 [exp] 236 / 9e-63 AT3G60860 2689 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.009G169800 [exp] 233 / 7e-62 AT4G38200 2335 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.014G070600 [exp] 230 / 7e-61 AT3G60860 2664 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Potri.006G216900 [exp] 178 / 1e-44 AT3G43300 2728 / 0.0 BFA-VISUALIZED ENDOCYTIC TRAFFICKING DEFECTIVE1, HOPM interactor 7 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021771 [exp] 1817 / 0 AT5G19610 1727 / 0.0 GNOM-like 2 (.1) Lus10034615 [exp] 1770 / 0 AT5G19610 1647 / 0.0 GNOM-like 2 (.1) Lus10026627 [exp] 910 / 0 AT1G13980 2395 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10030432 [exp] 905 / 0 AT1G13980 2383 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10036789 [exp] 868 / 0 AT1G13980 2300 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10037140 [exp] 858 / 0 AT1G13980 2274 / 0.0 VASCULAR NETWORK 7, GNOM, EMBRYO DEFECTIVE 30, sec7 domain-containing protein (.1.2) Lus10009300 [exp] 231 / 4e-61 AT3G60860 2741 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10022983 [exp] 226 / 2e-59 AT4G38200 2320 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10001620 [exp] 202 / 3e-52 AT4G38200 2254 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1) Lus10015863 [exp] 202 / 4e-52 AT4G38200 1880 / 0.0 SEC7-like guanine nucleotide exchange family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01369 [poplar] [flax] Sec7 Sec7 domain PF12783 [poplar] [flax] Sec7_N Guanine nucleotide exchange factor in Golgi transport N-terminal
Representative CDS sequence Show only first row Show all	>Potri.018G075300.1 pacid=42801101 polypeptide=Potri.018G075300.1.p locus=Potri.018G075300 ID=Potri.018G075300.1.v4.1 annot-version=v4.1 ATGGAGTCAACAGGAGGAGAGGAAGAAGAAAGAAAGCTATGTAAGTCATACCAACAGAAAAGGAAAAGAAAAGAAATTACCTCCGCCTGCATGTTGAACA CCGAGCTGGGCGCTGTCTTGGCCGTGATGCGGCGGCCGCAACAAGAACCGTCCTTTTATACTTCAGATAGTCAAAGCGATACCAATATTCTTAATTCCTT GAAATCTCTGCGTTCCTTAATCTTCAATCCTCAACAAGAATGGCAAACCATAGATCCCTCCATTTATATCTCCCCATTTCTCGATGTGGTACAAGGTGAA AACATTCCCGCAGCCGCCACAATTGTTGCACTTTCGGCCATTTTGAAGATTCTCAGGCTCGAAATTTTCAACGAGAAGACCCCTGGAGCTAGAGATGCAA TAACTTGTATTGTGACTGGGGTTTCCACTTGTCGCCTTGAAACTACAAACCAAGCATGTGAAGAAGCTGTGATGCTGAGAATTCTACAGGTTTTGACAGC AGTCATGAGACACAGCGCTTCAATTTTGCTTTCGAATCATGCTGTTTGTACCCTGGTAAATACATGTTTCCAAGTTGTTCAACAATCAGCGAACAGGAGT GATTTGCTTCAACGCAGTGCAAGATATGCAATGCATGAAGTTTTACAGGTTATATTTTCGAGGTTGTTAGAAATTGAGGTAAAACCCGAGCAATGCGAGT CTGATACGGAGGATGTTGACGATGGCACCGATTCAGATTCTGGTTATGGAGTTCGCTGTGCTGTTGACATCTTTCACTTCTTATGCTCATTGCTTAACGT GGTTCAGGTTGTGGAGACAGAAGGGTCTACATCTCATGCAGCTGATGAGGATGTTCAGCTTTTCTCCTTGGTTTTGATAAATTCTTGCATAGAGTTGGGT GGACCTGAAATTGGGAAGCACCCCAAACTCTTGAGGATGATTCAGGATGACCTGTTTCACCATTTGATCCATTATGGAACTCGATCAGCCCCCCTTCTAT TCTCCATGATCTGCAGTATTGTTTTGAATATTTATCACTTTCTTAAAAGGTTCATTCGTCTTCAACTAGAAGCCTTTTTCAGATTTGTAATACTGAGAGT AGCTTCTACAGGATCTTCAGTTCACCTCCAAGAAGTTGCAGTTGAAGCAATTATAAATTTCTTGAGGCAATCATCATTTATAATGGAAGTGTACGTCAAC TATGACTGCCATCCTACCTGCCTAAGTGTATTCGAGGAGATTGGAAAGTTGCTATGCAAGCTCGCATTTCCAGGGGCTGTCCCTTTGACCACCATACAAG TCCAAGCCTTTGAAGGTCTAGTGATCATAATGCACACCATCGCGGAGAACATTGATAATCAAGGTGATTCATGTCCTTTTGGACCATATCCAGTTGAAAT TACCGAGTATAGACCCTTTTGGGAAGAGAAGTCCAAAGACGATTTAGATTTGGAGACTTGGGTAGAAGACTCAAGAATAAGGAGAACACAGAAAAAGAAA CTGTTGATTGCTAGGGACCATTTTAATCGAGACGAGAAGAAAGGTTTGGAGTACTTGAAACTTTGCCAATTAGTCTCAGATCCAGCAGATCCAAAAGACA TTGCTATGTTCTTTCGCTACACACCAGAACTAGACAAGAACATGATGGGCGATTATCTTGGTGATCCTGATGAGTTTCATCTTCGAGTTCTTCGAGAATT CGCAGAAACCTTCAGATTTTCAGGCGTGATTCTTGACACAGCACTCCGTACCTATCTCGCAGCCTTTCGGTTACCAGGGGAATCCCAAAAGATTCAGCGG ATCCTTGAAGCATTCTCGGATAGATTTTATGACCAACAATCCTCAGATATATTTGCTAGCAAGGATGCAGTCTTCATCCTTTGTTACTCCCTCATAATGC TCAATACTGATCAACATAATCCACAAGTTAAGAAAAAGATGACCGAGGAGGAATTTATCCGGAACAATAGAGCAATCAATGGGGGGCAGGATCTTCCCAG AGAGTACCTTTCTGAGCTCTTCCAATCAATCGCAACCAATCCAATCGCAGTTTTTGGTCAATCTGGTTTGCTAGTGGAGATGAACCCAGGCAGGTGGATG GAGCTGATGAACCAATCCAAAGTTATGCAGCTCTACATCCAATGTGATTTTGATCGTCAGCTGGGAAGAGATATGTTTGCTTGCGTTGCTGGTCCATCAA TTGCAGCTCTTTCTGCATTCTTTGAGCATTCTGATGAAGATGAGATGTTCCATGAATGCATTGAAGGATTGATGTCAGTAGCTAGGATAGCTCAGTATGG CCTAGAAGATACACTTGACGAGCTCATTGCCTCGTTTTCCAAATTCACTACATTGCTAAACCCTTATGCCTCTGCAGAAGAAACATTGTTCGCTTTTAGC AATGACATGAAACCAAAAATGGCTACTCTTGCCATTTTCACCATTGCAAACAGCTTTGGAGATTCAATTCGAGCGGGCTGGAGGAATATTGTGGACTGCT TGTTGAAACTCAAAAGGCTTAAGCTAATTCCTGAGTCTGCGATTGATTTTGATAATGCTGCCTCAGCAAACTTAAGTACTGAATCAGGTGTCATCTCTCC CTCCCACGATCCTAAATTTGGCGACAATCAGACTCCTAACGCTATTAGTCGGTTCTCACAATTTCTATCAGTAGAGAGCATGGAAGATTCATTATCTCTC GGAATGAGTGAATTTGAGCGAAACCTCAAGGTTATCAAACAGTGCCGAATTGGGAGCATCTTCAGCAATAGTTCAACTTTACCTGAAGACACTGTGCTGA ATCTTGGGCGTTCTTTGATCTTTGCAGCGGCTGGGAAAGGTCAAAAGTTCAGCACCCCAGTTGAAGAGGAAGAGACAGTTGGGTTCTGTTGGGATTTGGT AACTGTCATTGCTTTGGCCAACATTCACAGATTCCAGACATTTTGGCCTTCATTCCATGATTATTTGCTAGTAGTTGCTCAGTTTCCTCTTTTCTCCCCT ATCCCATTTGCTGAAAAGGGCATTTTATGTCTTTTCAAGGTATGTCTCAAGCTTCTTTCTTCATCCAGAGCTGATAAAATCTCAGAGGAGTTGATTTTCA AATCCATAAATTTGATGTGGAAGCTCGATAAAGAAATTCTTGACACATGTTGTGAGTCCATAACAAATACAATAAGCAAGATTCTTATTGGATATCCGGA AAATTTACAAACTCATCTTGGCTGGAAATCAGCACTCCATATGTTATCTGTTTCAGGCCGACACTTGGAAACCTACGAGCAAGGTGTTGAGACTTTGATC ACCTTGATGTCTGACACTGGACATGTTTCACGTATAAATTACGCTTATTGTATTGATTGTGCATTTGGATTTGTTGCACTCAAGAACAGTCCGCTAGAGA AGAACCTGAAGATACTAGACCTTCTATCAGATTCAGTGAATTTACTTATCCATTGGTACAGAAATTACTCTGATCCGGGAAGTAATCATAGCATGGTAAG CAATGCAAGCAATTCCTCGGTTGAGGACATCATAAAAGGTTCTGGCAACTATACCATGAATCTATTTATCAAACTCGGTGAAGCATTTAGAAAAACCAGC TTAGCACGACGAGAAGAGATGAGAAACCATGCAATTGCGTCGCTTCAGAAAAGTTTTACTTTGGCCGAGGAGCTTGACTTCTCACCAGTCAACTGCATCA ATTGTTTTAACCTGGTTATTTTTGCAATGGTAGACGACTTACTCGAAAAGATGGTGGAATATTCAAGGCGTGAGAACGCAGAGAGGGAGATGAGAGGTAT GGAAGGAACTCTAAAACTCGCAATGGAGCTCCTTACAGATGTTTACATGCTGTTCCTTAAGCAGATAGCAGCCAGCCCTGGGTTTAGGACTTTCTGGCTG GGAGTTTTGAGAAGAATGGATACATGTATGAAGGCGGATTTGGGAGTCTGGGGCGAGACAAAATTGCAACAAATAGTACCAAGTTTATTGAGAAGGATGA TCACGAAAATGAAAGAAGAAGAAATTTTAGTGCAAAAGGAGGGTGATGATCTCTGGGATATCACCGACATTCAAATACAGTGGATTGCTCCTTCACTCAA GGAGGAGCTGTTCCCTGACGAAATATAG
AA sequence Show only first row Show all	>Potri.018G075300.1 pacid=42801101 polypeptide=Potri.018G075300.1.p locus=Potri.018G075300 ID=Potri.018G075300.1.v4.1 annot-version=v4.1 MESTGGEEEERKLCKSYQQKRKRKEITSACMLNTELGAVLAVMRRPQQEPSFYTSDSQSDTNILNSLKSLRSLIFNPQQEWQTIDPSIYISPFLDVVQGE NIPAAATIVALSAILKILRLEIFNEKTPGARDAITCIVTGVSTCRLETTNQACEEAVMLRILQVLTAVMRHSASILLSNHAVCTLVNTCFQVVQQSANRS DLLQRSARYAMHEVLQVIFSRLLEIEVKPEQCESDTEDVDDGTDSDSGYGVRCAVDIFHFLCSLLNVVQVVETEGSTSHAADEDVQLFSLVLINSCIELG GPEIGKHPKLLRMIQDDLFHHLIHYGTRSAPLLFSMICSIVLNIYHFLKRFIRLQLEAFFRFVILRVASTGSSVHLQEVAVEAIINFLRQSSFIMEVYVN YDCHPTCLSVFEEIGKLLCKLAFPGAVPLTTIQVQAFEGLVIIMHTIAENIDNQGDSCPFGPYPVEITEYRPFWEEKSKDDLDLETWVEDSRIRRTQKKK LLIARDHFNRDEKKGLEYLKLCQLVSDPADPKDIAMFFRYTPELDKNMMGDYLGDPDEFHLRVLREFAETFRFSGVILDTALRTYLAAFRLPGESQKIQR ILEAFSDRFYDQQSSDIFASKDAVFILCYSLIMLNTDQHNPQVKKKMTEEEFIRNNRAINGGQDLPREYLSELFQSIATNPIAVFGQSGLLVEMNPGRWM ELMNQSKVMQLYIQCDFDRQLGRDMFACVAGPSIAALSAFFEHSDEDEMFHECIEGLMSVARIAQYGLEDTLDELIASFSKFTTLLNPYASAEETLFAFS NDMKPKMATLAIFTIANSFGDSIRAGWRNIVDCLLKLKRLKLIPESAIDFDNAASANLSTESGVISPSHDPKFGDNQTPNAISRFSQFLSVESMEDSLSL GMSEFERNLKVIKQCRIGSIFSNSSTLPEDTVLNLGRSLIFAAAGKGQKFSTPVEEEETVGFCWDLVTVIALANIHRFQTFWPSFHDYLLVVAQFPLFSP IPFAEKGILCLFKVCLKLLSSSRADKISEELIFKSINLMWKLDKEILDTCCESITNTISKILIGYPENLQTHLGWKSALHMLSVSGRHLETYEQGVETLI TLMSDTGHVSRINYAYCIDCAFGFVALKNSPLEKNLKILDLLSDSVNLLIHWYRNYSDPGSNHSMVSNASNSSVEDIIKGSGNYTMNLFIKLGEAFRKTS LARREEMRNHAIASLQKSFTLAEELDFSPVNCINCFNLVIFAMVDDLLEKMVEYSRRENAEREMRGMEGTLKLAMELLTDVYMLFLKQIAASPGFRTFWL GVLRRMDTCMKADLGVWGETKLQQIVPSLLRRMITKMKEEEILVQKEGDDLWDITDIQIQWIAPSLKEELFPDEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19610		GNL2	GNOM-like 2 (.1)		Potri.018G075300 [exp]	0	1
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.011G069600 [exp]	1.41	0.9439
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.007G124300 [exp]	4.12	0.9656
AT4G34588		CPuORF2	conserved peptide upstream ope...		Potri.009G119650 [exp]	7.61	0.9023
AT3G51970		ATASAT1, ASAT1,...	ARABIDOPSIS THALIANA STEROL O-...		Potri.016G014600 [exp]	9.74	0.9363
					Potri.005G218650 [exp]	9.94	0.9154
AT1G21280			unknown protein		Potri.004G127101 [exp]	10.19	0.9211
					Potri.004G013800 [exp]	10.24	0.9339
AT3G06600			unknown protein		Potri.010G147301 [exp]	19.74	0.8981
AT5G61340			unknown protein		Potri.012G068000 [exp]	22.53	0.8321
AT1G22240		APUM8	pumilio 8 (.1)		Potri.001G457700 [exp]	24.33	0.9332

Compare expression of checked genes

Potri.018G075300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.