Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24490 252 / 1e-81 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) AT3G14180 81 / 9e-17 Trihelix ASIL2 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) AT3G11100 79 / 9e-17 Trihelix sequence-specific DNA binding transcription factors (.1) AT5G05550 73 / 1e-14 Trihelix sequence-specific DNA binding transcription factors (.1.2) AT3G58630 70 / 2e-13 Trihelix sequence-specific DNA binding transcription factors (.1) AT3G24860 68 / 9e-13 Trihelix Homeodomain-like superfamily protein (.1) AT3G10030 69 / 1e-12 Trihelix aspartate/glutamate/uridylate kinase family protein (.1.2) AT1G54060 61 / 4e-10 Trihelix ASIL1 6B-interacting protein 1-like 1 (.1) AT3G54390 60 / 7e-10 Trihelix sequence-specific DNA binding transcription factors (.1) AT2G44730 54 / 7e-08 Trihelix Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G179800 [exp] 243 / 3e-77 AT3G24490 206 / 2e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.003G056000 [exp] 230 / 3e-72 AT3G24490 205 / 8e-63 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Potri.008G071300 [exp] 90 / 3e-20 AT5G05550 209 / 3e-67 sequence-specific DNA binding transcription factors (.1.2) Potri.003G200000 [exp] 86 / 2e-18 AT3G14180 172 / 2e-49 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.T126206 [exp] 84 / 7e-18 AT3G14180 173 / 9e-50 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Potri.001G113600 [exp] 74 / 1e-14 AT3G58630 138 / 1e-38 sequence-specific DNA binding transcription factors (.1) Potri.003G118600 [exp] 73 / 3e-14 AT3G58630 139 / 5e-39 sequence-specific DNA binding transcription factors (.1) Potri.010G186200 [exp] 65 / 8e-12 AT5G05550 149 / 3e-44 sequence-specific DNA binding transcription factors (.1.2) Potri.001G026000 [exp] 65 / 2e-11 AT3G14180 186 / 1e-54 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017725 [exp] 309 / 3e-103 AT3G24490 243 / 1e-77 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10033094 [exp] 304 / 4e-101 AT3G24490 238 / 6e-76 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10019388 [exp] 247 / 3e-78 AT3G24490 200 / 2e-60 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10025772 [exp] 231 / 6e-73 AT3G24490 223 / 3e-70 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10035893 [exp] 220 / 1e-68 AT3G24490 214 / 1e-66 Alcohol dehydrogenase transcription factor Myb/SANT-like family protein (.1) Lus10025404 [exp] 96 / 1e-22 AT3G14180 197 / 1e-61 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10015282 [exp] 76 / 3e-16 AT3G58630 140 / 3e-41 sequence-specific DNA binding transcription factors (.1) Lus10007273 [exp] 78 / 4e-16 AT3G14180 200 / 4e-62 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10025406 [exp] 75 / 4e-15 AT3G14180 202 / 3e-63 Arabidopsis 6B-interacting protein 1-like 2, sequence-specific DNA binding transcription factors (.1) Lus10024143 [exp] 63 / 1e-10 AT3G54390 172 / 2e-50 sequence-specific DNA binding transcription factors (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF13837 [poplar] [flax] Myb_DNA-bind_4 Myb/SANT-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.018G075500.3 pacid=42800988 polypeptide=Potri.018G075500.3.p locus=Potri.018G075500 ID=Potri.018G075500.3.v4.1 annot-version=v4.1 ATGGACTACATTGAAGACGATCCAAGGTACCCACCAAAATCTTATTCTCTGAATCGATCAAAAAAACACCCTTTATATCCTCAGCGCCAAACCCCAACTC TTCACTACAACTACGATTACGATTACGATTACGATTACCTCGACGTTGACGAAGACGGCGACGAGTTGGACGATGAATTCCTGGACAAGAACGACAGCAG CTACAACCCTGGAGGCGGCTATGCTCGCAAGTTTCAACGAAACGAAGAGGCTTTTGAAAGATACCCAAAGAGGCAAAGGCTGAAAAACCCAGTTTCGAAT TATGAATTTGCTCCGAGAAACCCCAGATTATTGGCATATGGAGATGGGAATTCTGCGGTGGAATGGAGCGAACATGAGAAATTTGTTCTTTTGGAGGTGT GGGGTGATAAGTTCTTGCAATTGGGAAGGAACAGCCTAAGATCTGAAGATTGGGTTGATGTTGCTGAGAAAGTGTCAGAGACTTCGAAGATTGAAAGAAA TGAAGCACAGTGTAGGCAAATGATGGATGTTTTGAAGAGGAGGTACAAAAAAGAGAAGGCTAAAGGGGGCAATTTTAGCAAATGGGCTTATTTTAATAAA ATGGATATGTTAATGAAGCAAGAATCTGGAACTGTCGGTGGGTTTAGTTTAGCTTGTGGAGTGGATTCTGGAGAGTACGTTTTTATGGATACACGCGTGT ATTTGGATCGTGCCAATATGAATGATGAGATGAGGGATAGTCCGTGTGAGTCGGAGGAGGAGGAGGAGGAAGAAGAAGGAGGAGGGAGTGCTGGGAATGA TGGGATGAAGGGGTTGAGAGTGTTGGCTGAATCGGTGCAGAAGTTTGGGGAGATATATGGGAAGATTGAGAGCAGTAAGAGGGAGCAGATGATGGAATTG GAAAGGATGAGGATTGAGTTTCAAATGGATTTGGAGTTGCAGAAGAAGCAAATTTTGGATAGGGCGCAGGCGGAGATTGCCAAAATAAGAGAAGAAGATG ATGATGAGGAGGATGAAGACAATTCTGATGATGATGATGTTTCTGGAGGGAATATCAGCAAATAA
AA sequence Show only first row Show all	>Potri.018G075500.3 pacid=42800988 polypeptide=Potri.018G075500.3.p locus=Potri.018G075500 ID=Potri.018G075500.3.v4.1 annot-version=v4.1 MDYIEDDPRYPPKSYSLNRSKKHPLYPQRQTPTLHYNYDYDYDYDYLDVDEDGDELDDEFLDKNDSSYNPGGGYARKFQRNEEAFERYPKRQRLKNPVSN YEFAPRNPRLLAYGDGNSAVEWSEHEKFVLLEVWGDKFLQLGRNSLRSEDWVDVAEKVSETSKIERNEAQCRQMMDVLKRRYKKEKAKGGNFSKWAYFNK MDMLMKQESGTVGGFSLACGVDSGEYVFMDTRVYLDRANMNDEMRDSPCESEEEEEEEEGGGSAGNDGMKGLRVLAESVQKFGEIYGKIESSKREQMMEL ERMRIEFQMDLELQKKQILDRAQAEIAKIREEDDDEEDEDNSDDDDVSGGNISK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Potri.018G075500 [exp]	0	1
AT1G55460	C2H2ZnF		DNA/RNA-binding protein Kin17,...		Potri.008G055300 [exp]	1.00	0.9125
AT1G33520		MOS2	modifier of snc1, 2, D111/G-pa...		Potri.003G104200 [exp]	2.44	0.8833
AT5G44080	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.002G067400 [exp]	3.00	0.8228	Pt-GBF4.1
AT3G51650			unknown protein		Potri.016G133700 [exp]	4.89	0.8600
AT3G47120	C3HZnF		RNA recognition motif (RRM)-co...		Potri.009G044900 [exp]	5.91	0.8374
AT4G13110			BSD domain-containing protein ...		Potri.008G199100 [exp]	6.24	0.8121
AT1G80930			MIF4G domain-containing protei...		Potri.016G121100 [exp]	9.38	0.8519
AT5G45190			Cyclin family protein (.1.2)		Potri.003G148800 [exp]	9.48	0.7960
AT5G19900			PRLI-interacting factor, putat...		Potri.003G214300 [exp]	9.48	0.8473
AT3G49601			unknown protein		Potri.006G233000 [exp]	9.79	0.8451

Compare expression of checked genes

Potri.018G075500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.