Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24480 607 / 0 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 585 / 0 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT4G18670 582 / 0 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 453 / 7e-149 LRX2 leucine-rich repeat/extensin 2 (.1) AT5G25550 437 / 4e-148 Leucine-rich repeat (LRR) family protein (.1) AT1G12040 439 / 1e-144 LRX1 leucine-rich repeat/extensin 1 (.1) AT3G22800 429 / 3e-144 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 416 / 3e-136 Leucine-rich repeat (LRR) family protein (.1) AT1G49490 418 / 2e-135 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 418 / 3e-134 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G158814 [exp] 736 / 0 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.006G245600 [exp] 536 / 0 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.018G035100 [exp] 495 / 5e-168 AT3G24480 483 / 4e-166 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 482 / 9e-160 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G151000 [exp] 465 / 2e-157 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.010G083000 [exp] 434 / 6e-147 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083100 [exp] 422 / 2e-143 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 427 / 1e-138 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 411 / 1e-135 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017727 [exp] 597 / 0 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10037905 [exp] 439 / 2e-148 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 439 / 1e-146 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10039362 [exp] 404 / 8e-136 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 408 / 2e-134 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10006611 [exp] 395 / 5e-132 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 393 / 5e-131 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 399 / 9e-130 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10041190 [exp] 387 / 1e-128 AT3G22800 421 / 3e-145 Leucine-rich repeat (LRR) family protein (.1) Lus10027935 [exp] 394 / 1e-127 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G075900.2 pacid=42802095 polypeptide=Potri.018G075900.2.p locus=Potri.018G075900 ID=Potri.018G075900.2.v4.1 annot-version=v4.1 ATGAAGAAGACGACCCACTCCCATCTTCATCTCTCACTTCTCATTGCCTTGTTTCTTGGCACAGTTGTGTGCCTCTCTGCTGCTAAGCAAGCACCGACTA TCTCTAGCTATGGAGGCCTCAGTGACGCCGACGCTATGTACATCAAGAAGCGGCAGCTTCTTTACTACAAAGACGAATTTGGTGACAGAGGAGAGAGAGT CACAGTAGACCCATCTCTTGTTTTTCCGAATCCAAGACTTAGAAATGCTTACATAGCATTACAGGCTTGGAAACAAGCCATCTTCTCAGACCCTCTAAAC CTTACAGCCAATTGGGTTGGATCCCAAGTTTGCAACTATGAGGGGGTTTTCTGCGCTCCAGCTCCGGACAACAAAACAATCCGTACAGTTGCCGGCATTG ATCTCAACCACGGTGATATTGCAGGGTACTTGCCTGAGGAGCTTGGCTTGCTGGTGGATCTTGCATTGTTTCACATCAACTCTAACAGGTTTTGTGGGAC TGTACCTCGTAAGTTCAAGGACATGAGGCTGCTCTTTGAACTGGATCTTAGCAACAATCGGTTTGCTGGGAAATTTCCACAGGTTGTGCTCAAGCTGCCT TCACTCAAATTCTTGGATCTGAGATTCAACGAGTTTGAGGGTACTGTACCAAAAGAGCTATTTGACAAGGACTTGGATGCAATCTTTATCAATCATAACA GGTTCGTTTTCGATCTACCTGAAAATCTTGGCAACTCCCCAGTATCTGTCATCGTTTTGGCGAACAACAAATTTCATGGATGTGTGCCGTCAAGCTTAGG TAACATGTCAAACCTCAATGAAATCATCCTCATGAACAATGGGTTTAGATCTTGCATGCCAGCAGAGATAGGTTTGCTTAAAGACCTAACAGTCTTGGAT GTTAGCTTCAATCAATTAATGGGTCCATTACCAGACGCATTTGGTGGAATGGCGAGTCTTGAACAGCTCAATGTAGCTCACAACATGCTCTCAGGGAAGA TTCCGGCAAGTATTTGTAAGTTGCCGAATTTGGATAACTTCACCTTCTCTTATAATTTCTTCACTGGAGAGCCACCAGTGTGTTTGAGTCTACCGGATTT CAGTGACAGGAGGAATTGTTTGCCAGCAAGACCATTACAGAGATCTGCTGCACAATGTAACGCATTTTTGTCTAGACCTGTTGATTGCAGCTCGTTTAGA TGTGCTCCTTTCGTTCCATCTTTGCCTCCTCCCCCTCCTCCCTCACCTCCAATGCCGGTACCTTCACCTCCACCTCCACCACCAGTTGTTATTCCACTGT CACCTCCACCCTCTCCGCCACCTCCAATATTTTCACCCCCGCCACCAGTGCACTCTCCACCTCCGCCCCCTCCACCAGTGTACTCTCCGCCTCCTCCCCC TCCACCTTCTCCATCGCCGCCACCACCCCCACCCGTAAATTCACCACCACCTCCACCGCCCTCTCCCCCACCGCCCTCTCCCCCACCGCCCTCACCCCCA CCACCCTCACCCCCACCACCTTCACCGCTGCCACCCCCACCCCCACCCCCACCCCCACCCCCATCTCCATTACCTCCATGTGTACGGCCCCCACCCCCGC CTCCACCAAATTCCCCACCACCGCCACACTCACAGCCCCCGCCTCCACCACCAGTTTATTCTTCACCACCGCCTCCTGTCAATTCTCCACCTCCCCCATA TAACTCTCCTCCACCTCCCCCATATCACTCTCCTCCACCTCCATCACCCCCACCTTGTATAGAACCGCCTCCACCTCCACCACCATGTGTAGAGTATTCA CCCCCCCCCACCCCCTCAATCGCCCCCCCCACCTTCTCCACCATCACCAGTGTATTCTCCTCCACCGCCTCCTACTCCACCTCCCCCACAATCATCACCG CCACCACCACCATCCCTGTCTCCCCCGCCGCCTCCTACACCACCCCCACCATCTCCATTACCTCCATGTGTACGTTCCCCACCACCGCCTCCACCAAATT CACCACCACCTCCATCACCAATATTCTCCCCACCACCACCTATTCCTTACTATTATAA
AA sequence Show only first row Show all	>Potri.018G075900.2 pacid=42802095 polypeptide=Potri.018G075900.2.p locus=Potri.018G075900 ID=Potri.018G075900.2.v4.1 annot-version=v4.1 MKKTTHSHLHLSLLIALFLGTVVCLSAAKQAPTISSYGGLSDADAMYIKKRQLLYYKDEFGDRGERVTVDPSLVFPNPRLRNAYIALQAWKQAIFSDPLN LTANWVGSQVCNYEGVFCAPAPDNKTIRTVAGIDLNHGDIAGYLPEELGLLVDLALFHINSNRFCGTVPRKFKDMRLLFELDLSNNRFAGKFPQVVLKLP SLKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFVFDLPENLGNSPVSVIVLANNKFHGCVPSSLGNMSNLNEIILMNNGFRSCMPAEIGLLKDLTVLD VSFNQLMGPLPDAFGGMASLEQLNVAHNMLSGKIPASICKLPNLDNFTFSYNFFTGEPPVCLSLPDFSDRRNCLPARPLQRSAAQCNAFLSRPVDCSSFR CAPFVPSLPPPPPPSPPMPVPSPPPPPPVVIPLSPPPSPPPPIFSPPPPVHSPPPPPPPVYSPPPPPPPSPSPPPPPPVNSPPPPPPSPPPPSPPPPSPP PPSPPPPSPLPPPPPPPPPPPSPLPPCVRPPPPPPPNSPPPPHSQPPPPPPVYSSPPPPVNSPPPPYNSPPPPPYHSPPPPSPPPCIEPPPPPPPCVEYS PPPTPSIAPPTFSTITSVFSSTASYSTSPTIITATTTIPVSPAASYTTPTISITSMCTFPTTASTKFTTTSITNILPTTTYSLLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.018G075900 [exp]	0	1
AT3G54690		SETH3	Sugar isomerase (SIS) family p...		Potri.002G037400 [exp]	2.44	0.8139
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.001G310400 [exp]	3.16	0.8153
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.005G146900 [exp]	5.29	0.8169
AT4G23020			unknown protein		Potri.001G110900 [exp]	5.47	0.8117
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.007G076500 [exp]	6.48	0.7654	ATH.2
AT5G42340		PUB15	Plant U-Box 15 (.1)		Potri.009G165900 [exp]	7.34	0.7907
AT1G45688			unknown protein		Potri.014G026800 [exp]	9.16	0.8107
AT2G25280			unknown protein		Potri.006G258200 [exp]	10.00	0.7467
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.002G114200 [exp]	12.40	0.8090	Pt-ATCSLC12.1
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.010G001100 [exp]	15.16	0.7863	ATSEB1.1

Compare expression of checked genes

Potri.018G075900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.