Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24460 622 / 0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT4G13345 605 / 0 MEE55 maternal effect embryo arrest 55, Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) AT2G33205 377 / 6e-129 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT3G06170 181 / 7e-53 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) AT1G16180 158 / 5e-44 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G174200 [exp] 385 / 7e-132 AT2G33205 553 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.008G201900 [exp] 185 / 2e-54 AT3G06170 605 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Potri.003G186500 [exp] 167 / 2e-47 AT1G16180 587 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Potri.001G038100 [exp] 155 / 5e-43 AT1G16180 584 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033091 [exp] 610 / 0 AT3G24460 562 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10017728 [exp] 603 / 0 AT3G24460 575 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10011768 [exp] 310 / 3e-103 AT2G33205 457 / 2e-160 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10023690 [exp] 306 / 8e-101 AT2G33205 438 / 3e-152 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10004430 [exp] 195 / 7e-58 AT3G06170 625 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10034023 [exp] 193 / 3e-57 AT3G06170 648 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1) Lus10008709 [exp] 158 / 4e-44 AT1G16180 670 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2) Lus10026111 [exp] 157 / 7e-44 AT1G16180 667 / 0.0 Serinc-domain containing serine and sphingolipid biosynthesis protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03348 [poplar] [flax] Serinc Serine incorporator (Serinc)
Representative CDS sequence Show only first row Show all	>Potri.018G076000.1 pacid=42802121 polypeptide=Potri.018G076000.1.p locus=Potri.018G076000 ID=Potri.018G076000.1.v4.1 annot-version=v4.1 ATGGAGAGTGGTGCAGGCATCACAAATGAGAGGCTTGCCGTGGTACTCAAAGATCCATCATGCTTTGGCCAATTCCGGAATGGTTCCAATCCCTGGATGG CCAGATATGTTTATGGCTTGATCTTTCTGTTTTCCAATCTGCTAGCTTGGGCTGCAAGGGACTATGGCCGTGGTGCCTCAGTGACATTGGAAAAACTGAA AGTGTGTGCGGGAAAATCTGACTGTTCGGGTGCTGAAGGAGTTCTGCGTGTGAGCTTGGGATGCTTTATATTTTACATAATAATGTTTCTTTCTACTGTT GGTACCTCAAAGTTGCATGGCCGCAGAGATGCATGGCATTCTGGATGGTGGACCGCTAAGATTGTCTTGTGGATTTCCTTGACAATTATCACATTTTTGG TGCCCTCTGCCTTTTTCCAAATTTATGGAGAGATTGCACATTTTGGTGCTGGGGTCTTTCTCCTAATTCAGCTAATAAGTGTAATCAGTTTTATTCGATG GCTGAATGATTGTTGCCAATCTGAAAAGAATGCAGTAAGATGCCACATCAATGTGATGCTAGTTGCAACTACTTCATATGTAGTATGCATACTTGGGGTC ATTCTAATGTACATTTGGTATACACCAGAGCCGTCTTGTATACTTAACATTTTCTTCATCACTTGGACCCTGGTACTGCTCCAGCTCATGACCAGCGTTT CTCTCCATCCCAAAGTGAATGCTGGCTTTTTGACTCCAGGGCTCATGGGGCTTTACGTTGTATTCCTCTGCTGGTGTGCCATCAGGAGTGAACCAGCAGG AGAAAGTTGCAACAGGAAGGCAGAAGCTTCAAGAAGAACAGACTGGCTAACCATTATAAGCTTTATTGTTGCACTGCTTGCTATTGTTATAGCCACATTT TCTACAGGCATTGATTCTCAATGCTTTCAGTTCAGGAAGGGGGACACGCAGGATGAGGATGATGTTCCATATGGTTATGGCTTTTTCCACTTTGTTTTTG CCACAGGAGCAATGTACTTTGCGATGCTATTGATTGGCTGGAATACTCATCACATCATTCAGAAGTGGACCATTGACGTGGGTTGGACCAGTGCTTGGGT GAGAATAGTGAACGAATGGCTCGCAGTTTGTGTTTACTTATGGATGCTGGTGGCTCCTATACTACTGAAGATCAGACGAACAGCAGAACCTGTTTAA
AA sequence Show only first row Show all	>Potri.018G076000.1 pacid=42802121 polypeptide=Potri.018G076000.1.p locus=Potri.018G076000 ID=Potri.018G076000.1.v4.1 annot-version=v4.1 MESGAGITNERLAVVLKDPSCFGQFRNGSNPWMARYVYGLIFLFSNLLAWAARDYGRGASVTLEKLKVCAGKSDCSGAEGVLRVSLGCFIFYIIMFLSTV GTSKLHGRRDAWHSGWWTAKIVLWISLTIITFLVPSAFFQIYGEIAHFGAGVFLLIQLISVISFIRWLNDCCQSEKNAVRCHINVMLVATTSYVVCILGV ILMYIWYTPEPSCILNIFFITWTLVLLQLMTSVSLHPKVNAGFLTPGLMGLYVVFLCWCAIRSEPAGESCNRKAEASRRTDWLTIISFIVALLAIVIATF STGIDSQCFQFRKGDTQDEDDVPYGYGFFHFVFATGAMYFAMLLIGWNTHHIIQKWTIDVGWTSAWVRIVNEWLAVCVYLWMLVAPILLKIRRTAEPV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24460			Serinc-domain containing serin...		Potri.018G076000 [exp]	0	1
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Potri.001G372300 [exp]	6.63	0.8749	PHB.2
AT2G22560			Kinase interacting (KIP1-like)...		Potri.007G011300 [exp]	8.83	0.8613
AT3G52870			IQ calmodulin-binding motif fa...		Potri.008G023866 [exp]	9.00	0.8472
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Potri.010G193800 [exp]	9.11	0.8786
AT4G33945			ARM repeat superfamily protein...		Potri.009G106100 [exp]	11.35	0.8763
AT3G09410			Pectinacetylesterase family pr...		Potri.006G084900 [exp]	15.42	0.8680
AT3G55770	LIM	WLIM2b	WLIM2b, GATA type zinc finger ...		Potri.008G063600 [exp]	15.49	0.8638
AT2G37080		RIP3	ROP interactive partner 3 (.1)		Potri.006G131400 [exp]	21.35	0.8173
AT4G30160		ATVLN4, VLN4	villin 4 (.1.2)		Potri.018G089700 [exp]	23.28	0.8782	Pt-VLN4.2
AT5G61480		PXY, TDR	TDIF receptor, PHLOEM INTERCAL...		Potri.001G126100 [exp]	23.97	0.8733

Compare expression of checked genes

Potri.018G076000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.