Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13350 370 / 4e-119 NIG NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) AT4G32630 249 / 8e-73 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) AT1G08680 223 / 1e-63 ZIGA4, AGD14 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) AT5G54310 81 / 6e-16 NEV, AGD5 NEVERSHED, ARF-GAP domain 5 (.1) AT3G17660 68 / 2e-12 AGD15 ARF-GAP domain 15 (.1) AT4G05330 67 / 2e-11 AGD13 ARF-GAP domain 13 (.1) AT4G21160 66 / 2e-11 ZAC, AGD12 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) AT3G07940 62 / 9e-10 Calcium-dependent ARF-type GTPase activating protein family (.1) AT2G35210 59 / 4e-09 RPA, AGD10, MEE28 MATERNAL EFFECT EMBRYO ARREST 28, root and pollen arfgap (.1.2) AT3G53710 59 / 5e-09 AGD6 ARF-GAP domain 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G035000 [exp] 398 / 2e-127 AT4G32630 210 / 2e-58 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Potri.006G246100 [exp] 398 / 2e-127 AT4G32630 224 / 1e-63 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Potri.013G068300 [exp] 248 / 1e-71 AT1G08680 499 / 2e-168 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Potri.011G127000 [exp] 80 / 2e-15 AT5G54310 466 / 4e-161 NEVERSHED, ARF-GAP domain 5 (.1) Potri.001G406300 [exp] 80 / 2e-15 AT5G54310 400 / 6e-135 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G044100 [exp] 79 / 4e-15 AT5G54310 347 / 3e-115 NEVERSHED, ARF-GAP domain 5 (.1) Potri.012G036900 [exp] 72 / 9e-14 AT3G17660 260 / 4e-88 ARF-GAP domain 15 (.1) Potri.004G035800 [exp] 71 / 2e-12 AT5G54310 333 / 2e-109 NEVERSHED, ARF-GAP domain 5 (.1) Potri.011G098500 [exp] 66 / 3e-11 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017729 [exp] 642 / 0 AT4G13350 457 / 3e-153 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Lus10033090 [exp] 419 / 3e-137 AT4G13350 338 / 4e-108 NSP (nuclear shuttle protein)-interacting GTPase (.1), NSP (nuclear shuttle protein)-interacting GTPase (.2) Lus10022113 [exp] 256 / 1e-73 AT4G32630 249 / 2e-72 ArfGap/RecO-like zinc finger domain-containing protein (.1.2) Lus10020306 [exp] 237 / 5e-69 AT1G08680 373 / 7e-122 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Lus10005686 [exp] 234 / 5e-67 AT1G08680 446 / 9e-149 ARF-GAP domain 14, ARF GAP-like zinc finger-containing protein ZIGA4 (.1.2.3.4) Lus10018445 [exp] 83 / 2e-16 AT5G54310 265 / 2e-83 NEVERSHED, ARF-GAP domain 5 (.1) Lus10011238 [exp] 83 / 2e-16 AT5G54310 261 / 5e-82 NEVERSHED, ARF-GAP domain 5 (.1) Lus10027249 [exp] 76 / 7e-15 AT5G54310 213 / 2e-66 NEVERSHED, ARF-GAP domain 5 (.1) Lus10038582 [exp] 77 / 2e-14 AT5G54310 508 / 2e-178 NEVERSHED, ARF-GAP domain 5 (.1) Lus10023265 [exp] 60 / 3e-09 AT4G21160 495 / 3e-177 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01412 [poplar] [flax] ArfGap Putative GTPase activating protein for Arf
Representative CDS sequence Show only first row Show all	>Potri.018G076200.1 pacid=42800834 polypeptide=Potri.018G076200.1.p locus=Potri.018G076200 ID=Potri.018G076200.1.v4.1 annot-version=v4.1 ATGGCGAATCGACTAAAAGAGGATGAAAAAAATGAGCGCATAATTCGTGGACTTCTCAAACATACAGAGAATCGCAGATGTATCAACTGTAACAGTCTGG GACCTCAGTATGTTTGCACAAACTTCTGGACATTTGTTTGCACCACCTGTAGTGGAATACACCGGGAGTTTACACATCGAGTAAAATCAGTATCAATGGC CAAATTCACCTCACAAGAAGTTGCTGCTCTTCAAGAAGGAGGAAATAAGCGTGCAAGGGATATTTATTTTAAAGAATGGGATTCACAACGCCAGTCTGCC CCTGACAGCAGTAATGTTGAGAGACTTCGAGACTTTATAAAACATGTTTATGTGGATAGAAGATATACAGGTGAGAGGAACTATGGCAAGCCTCCAAGTA TGAAGATGGATAACAAAGAAGACTTCTCTGAGAATAGGAAAACTGATGCGTATCAAGGAGGGTCTAGAAGTCCACCATATGAAGATACACATGAACATCG TTACAATGAAAGGTCTAGTCCTGGCGGAAGAAGTGATGATAAATATTCAAGATATAGTTATGATGAAAGAAGAAGTCCTGGATATGATCAAGAAAGTCGA CAGTATAATGATTACAAAAGAAGTCCCGCTCGTCCAGAAATTATCAATGATTGGCGTCGAGAGGATAGATTTGGAAATGGCAGGAAAGTGGAAGACCGAA GGATATCTGATGGAGATCCGAAAGTGGAAGGCAGGTCACCTGAGCGGCCAAAAGAGGACACTTCCAGCCCCCCTATGGTACGTCCTGTCAGAGAGATTTT GGGAGATAATGTAGTGCCTCTTCGTATAAGTGAACCTCCTAAATCCAATGTTTCAAGGCCTGCTGATGTCTCTGCTCCTACGCAGCGAACTGCATCTTCC AGTAGCTTGGGATCTGCTACTGGGAATCCAACAGAAGTGAAATTGGAGAATACTAGAAGCTTAATTGATTTTGATGCTGATCCTGAACCTCCTGCCGCCG CCTCAATTCCTCAAGCACAACAAGCTACAATTCCTCAATCAATTGTGCATTCTCCAAGTGCTACCAATGACAACAATTGGGCTTCTTTTGATTTTGCCCC TGAGAATAAAGCATCTCAGGTTCCAAAAGCAAATCCACTGGAATCTGTTCTCTCACAACTCTCAGTTCCAGTACCTGGACCTGGTCATATATTGGGATCA CACAGTGGTGCTGGTGCTCCTGCAACAGCAGCTGTGGGTAATCCAACAAATGCTTCCCTTTTTGCATCTGCAGGGAACACATCGATGTTGCCCTTCAATT CTGTAGCTCCTGCAGCCACACCAGTTAATAACTTGTCAATATTACATGCTGGTGGTGTTTCAGCAACTGCCCCAGGATTGGCACCTGCTATGCCTGTCAA TGGTGGTAATTCATTTGCCAGTGTTACAGAAGCAGGGCAGTGGCCTAGTGTGCAGCATCAGCAACCTTCTTTATTCCCTGTTTCTACTGGTCATTCTACT ACTCAACAATTTACCCCACCATTAGCTTCAGGGAATCAGACCTGGAATGTGTCTCCTGCCTCAAATGTGCAAGTGTCTTTGGCGACACCGTATGCAGGAG CTCCTCAAATTGTCTCAAATCCTGCATCAGGATTCATGTCTGCTGGTCTATCACAACCATCAGCTGTGGAAGTTAAACCAACTGGAAGAAGAGAACTGCC TGTGGATCTTTTTGCTGCTACATATTCACCTTATCCTGCAGCAATTCCAGGGTGGCCATCTGGTCCAGCTCGTGGTATGGGTTTCGCTGTGCAATATAAT AGTGTTCCAGCGTCTATGCCAACTTTTCTCCAGCAACCTAAGTCAGCAAACCCTTTTGATCTCAGTGAACCAGTTCAAGCCCAACATTTTCCTTCAATGA CGCCTTTGCATGCTGCTCTACCAAATATGCCACCTTCGGGCTTACAACATGCTTCCAGTCTTGGTACGCCCTCACCAGCATGGATGTCACCCCAGTCATC TCCTTATCCACCAGCATTGCCTTCCCAGGCACCGCCTTATTCTTCATCTATACCTCCAAGGGCGTATGTGGCTCAACAAGCACCGAGTAGTATGCCTTTT GCAGGGCATCAAGTAGGAGGTGGCTTTGGCGGTGATGGTGCTGCTTTTGGTGCCGTGAATATGGATCAACAGGTGGCTGGTAGATTCTCTGCCCCTCCAA CCCCACAGCCTTTCTCTTCTGTTGGAGGAAATCCTTTTGGATGA
AA sequence Show only first row Show all	>Potri.018G076200.1 pacid=42800834 polypeptide=Potri.018G076200.1.p locus=Potri.018G076200 ID=Potri.018G076200.1.v4.1 annot-version=v4.1 MANRLKEDEKNERIIRGLLKHTENRRCINCNSLGPQYVCTNFWTFVCTTCSGIHREFTHRVKSVSMAKFTSQEVAALQEGGNKRARDIYFKEWDSQRQSA PDSSNVERLRDFIKHVYVDRRYTGERNYGKPPSMKMDNKEDFSENRKTDAYQGGSRSPPYEDTHEHRYNERSSPGGRSDDKYSRYSYDERRSPGYDQESR QYNDYKRSPARPEIINDWRREDRFGNGRKVEDRRISDGDPKVEGRSPERPKEDTSSPPMVRPVREILGDNVVPLRISEPPKSNVSRPADVSAPTQRTASS SSLGSATGNPTEVKLENTRSLIDFDADPEPPAAASIPQAQQATIPQSIVHSPSATNDNNWASFDFAPENKASQVPKANPLESVLSQLSVPVPGPGHILGS HSGAGAPATAAVGNPTNASLFASAGNTSMLPFNSVAPAATPVNNLSILHAGGVSATAPGLAPAMPVNGGNSFASVTEAGQWPSVQHQQPSLFPVSTGHST TQQFTPPLASGNQTWNVSPASNVQVSLATPYAGAPQIVSNPASGFMSAGLSQPSAVEVKPTGRRELPVDLFAATYSPYPAAIPGWPSGPARGMGFAVQYN SVPASMPTFLQQPKSANPFDLSEPVQAQHFPSMTPLHAALPNMPPSGLQHASSLGTPSPAWMSPQSSPYPPALPSQAPPYSSSIPPRAYVAQQAPSSMPF AGHQVGGGFGGDGAAFGAVNMDQQVAGRFSAPPTPQPFSSVGGNPFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13350		NIG	NSP (nuclear shuttle protein)-...		Potri.018G076200 [exp]	0	1
AT3G22270			Topoisomerase II-associated pr...		Potri.006G021900 [exp]	3.31	0.8742
AT2G35230		IKU1	HAIKU1, VQ motif-containing pr...		Potri.001G142400 [exp]	8.36	0.8519
AT1G69060			Chaperone DnaJ-domain superfam...		Potri.010G139100 [exp]	10.81	0.8467
AT3G13060		ECT5	evolutionarily conserved C-ter...		Potri.007G002800 [exp]	11.13	0.8445
AT5G47430			DWNN domain, a CCHC-type zinc ...		Potri.001G156000 [exp]	15.87	0.8217
AT1G32610			hydroxyproline-rich glycoprote...		Potri.003G091800 [exp]	17.66	0.8341
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.017G150100 [exp]	19.49	0.8221
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Potri.010G195500 [exp]	20.19	0.8088
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.008G109200 [exp]	25.98	0.8253
AT4G02720			unknown protein		Potri.002G051500 [exp]	26.26	0.8380

Compare expression of checked genes

Potri.018G076200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.