Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24440 530 / 0 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) AT4G30200 226 / 3e-64 VEL1, VIL2 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) AT5G57380 225 / 3e-64 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT2G18880 187 / 2e-51 VIL3, VEL2 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) AT2G18870 85 / 4e-18 VIL4, VEL3 VIN3-like 4, vernalization5/VIN3-like 3, vernalization5/VIN3-like (.1) AT3G63500 49 / 2e-05 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) AT1G14740 47 / 5e-05 Protein of unknown function (DUF1423) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G158676 [exp] 1335 / 0 AT3G24440 523 / 9e-179 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.006G167800 [exp] 385 / 2e-123 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.018G091500 [exp] 386 / 4e-123 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.002G111600 [exp] 230 / 8e-67 AT2G18880 262 / 7e-81 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) Potri.009G059000 [exp] 47 / 7e-05 AT3G63500 693 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Potri.010G102600 [exp] 46 / 9e-05 AT1G14740 773 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.008G138100 [exp] 46 / 0.0001 AT1G14740 729 / 0.0 Protein of unknown function (DUF1423) (.1) Potri.001G264100 [exp] 43 / 0.0008 AT3G63500 660 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019394 [exp] 809 / 0 AT3G24440 499 / 8e-171 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10043251 [exp] 611 / 0 AT3G24440 432 / 8e-145 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10019393 [exp] 569 / 0 AT3G24440 381 / 6e-126 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10043250 [exp] 265 / 7e-82 AT3G24440 226 / 3e-68 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10038260 [exp] 217 / 1e-60 AT4G30200 561 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10028170 [exp] 199 / 7e-56 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10042869 [exp] 198 / 1e-55 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10025841 [exp] 169 / 5e-44 AT4G30200 484 / 8e-163 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10019718 [exp] 53 / 8e-07 AT3G63500 665 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10016399 [exp] 52 / 3e-06 AT3G63500 717 / 0.0 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0159 [poplar] [flax] E-set PF00041 [poplar] [flax] fn3 Fibronectin type III domain CL0390 [poplar] [flax] zf-FYVE-PHD PF07227 [poplar] [flax] PHD_Oberon PHD - plant homeodomain finger protein
Representative CDS sequence Show only first row Show all	>Potri.018G076500.1 pacid=42801985 polypeptide=Potri.018G076500.1.p locus=Potri.018G076500 ID=Potri.018G076500.1.v4.1 annot-version=v4.1 ATGGACTTAGAGGATACATTCCTTGCTAAAGTTTCTGGTGTTCAAAGCCTTTCTTCCAGTGTGCAAAGCACCCCAGAAAAAAATGGCAATTCAGATGATG CTTCAAGAAGTCCAGAACTCCTTCAAGAGTTCCTAAAATCTGGTCCCAAAAAGGAACTTCTTCGAACTTGCTTGGATAAGGACAAGAAACAGACAGCTTC ATCAAAAAGCAAAATGACAGAACTTATGAAGACAGGTAACAAAACTACCAAGAAGCAGGAAACTAAAAAAGCTTCTTCCAGTCCCAACAATCAACCTTCT TTTAAGAAGCAACAAAGAAAAGGGGAAAATCCTATGAGACTTGTACCTGCTTCTGAGCAGTCACCCGATTTTGGATGTTCAAACTCATGGATATGTAAAA ATTCAGCTTGTAGAGCTGTTCTATCCATTGACGACACGTTTTGCAAGAGGTGCTCATGCTGTATTTGTCATTTATTTGATGACAATAAAGACCCTAGTCT CTGGTTGGTTTGCACATCTGAAAGTGGTCAGGGGGACTCCTGTGAGCTATCTTGTCATATTGAATGTGCCCTTCAACGTGAAAAGGTGGGGGTTGTTGAC CTTGGCCAATTGATGCAGCTAGATGGTAGTTATTGTTGTGCTTCTTGTGGTAAAGTTTCAGGGATTCTCGGAAGTTGGAAGAAGCAGCTACTTATAGCAA AGGATGCTCGTCGACTTGATGTGCTCTGTTATAGGATATACTTGAGCTACAGGCTACTTGATGGGACTTCAAGGTTTAAAGAACTGCATGAAATTGTCAA GGATGCCAAGGCCAAACTTGAAATAGAAGTGGGTCCAGTAGATGGTGTTTCTGCCAAGATGGCACGTGGCATTGTCAGCAGACTCTCTGTCGCTGGTGAT GTGCAGAAACTATGCTCTCTTGCAATTGAAAAGGCAGATGAATGGCTCACTACCATCTCTAGTGCAAACCCAAATTGCAGAGAGGATTCCCTTCCTGCTG CTTGCAGATTCTTATTTGAAGAAGTGAAGTCCTCATCTGTTGTAATTATTTTAATTGAATTGTCTATTGCATCATCTGCTGACATTAAGGGCTACAAACT CTGGTATTGCAAGAGTAGAGAAGAGACACATGCAAAAGAACCTATTTGCGTGTTTCCAAGATCTCAGAGGAGGATTTTGATCTCTAATCTACAGCCTTGT ACAGAGTATACTTTTCGGATTGTTTCTTATACAGAGGCTGGTGACTTGGGGCACTCCGAAGCAAAGTGTTTTACCAAGAGCATAGAGATAATTCACAAAA ATCCCAATCCTTCAGTTGCAAGGAATAGTAAGAAAGAGAATACCATCACTGGAGGATGTACTTCTAGCTACAACAGGGATTCTGAAACTGCAACTGGAGT TAATTCTTCTGGATTCAAGGTTCGTGATCTTGGAAAGATCCTCCATCTGGCTGGGGCTCAACAGCAAGGCTGCTTTGAAGGTTTCTGCAGTGCTGATACT GAAAAATGCTGTGGAGCAAGTAAACTGGTCAAGCTTCAAACTTCAGAAGATCCAGTGCCATCTGTTTCACATGGGCTAGACTTAAATGTTGTTTCCATGC CTGACTTGAATGAAGAGCTGACTCCTCCATTTGAGTCCTCCCGTGATGAGGATAATGGGTGCACTTTGGAGCAGGCCATTGAGGCAGATGATGATGCTGC TTCTCATGAGGTGGAGAAAAATGGTTTAGCGACATCTCATGGTAGTGGTGACTCCCAGACCTGGATGCATGGGCCAAGTGGGGAAGTGCCTACTGTTGAT TCCCGGTCGGAGTTGTGCAGGAAAAGGGCTGCACACGCAAATGAAGACTTGCATGACTGTGATAGCACGTTGATAAATGGATCACCATTCCATGTGTCCA GTGGCTCAGGTTACCTGGATGAGAACTTTGAGTACTGTGTGAAGACAATCCGATGGTTGGAATGCGAGGGTCACATTAACCAGGAATTTAGATTGAAATT GCTGACATGGTTTAGTTTGAGATCAACAGAACAAGAACGTAGAGTGGTTAACACCTTCATCCAAACTTTGATCGATGATCCCAGTAGCTTGGCAGGACAG TTGGTTGATTCCTTTTCAGATATCATATCCAGCAAGAGGCCACGGAATGGTTTTTGTGGCAAGCTGTGGCATTAA
AA sequence Show only first row Show all	>Potri.018G076500.1 pacid=42801985 polypeptide=Potri.018G076500.1.p locus=Potri.018G076500 ID=Potri.018G076500.1.v4.1 annot-version=v4.1 MDLEDTFLAKVSGVQSLSSSVQSTPEKNGNSDDASRSPELLQEFLKSGPKKELLRTCLDKDKKQTASSKSKMTELMKTGNKTTKKQETKKASSSPNNQPS FKKQQRKGENPMRLVPASEQSPDFGCSNSWICKNSACRAVLSIDDTFCKRCSCCICHLFDDNKDPSLWLVCTSESGQGDSCELSCHIECALQREKVGVVD LGQLMQLDGSYCCASCGKVSGILGSWKKQLLIAKDARRLDVLCYRIYLSYRLLDGTSRFKELHEIVKDAKAKLEIEVGPVDGVSAKMARGIVSRLSVAGD VQKLCSLAIEKADEWLTTISSANPNCREDSLPAACRFLFEEVKSSSVVIILIELSIASSADIKGYKLWYCKSREETHAKEPICVFPRSQRRILISNLQPC TEYTFRIVSYTEAGDLGHSEAKCFTKSIEIIHKNPNPSVARNSKKENTITGGCTSSYNRDSETATGVNSSGFKVRDLGKILHLAGAQQQGCFEGFCSADT EKCCGASKLVKLQTSEDPVPSVSHGLDLNVVSMPDLNEELTPPFESSRDEDNGCTLEQAIEADDDAASHEVEKNGLATSHGSGDSQTWMHGPSGEVPTVD SRSELCRKRAAHANEDLHDCDSTLINGSPFHVSSGSGYLDENFEYCVKTIRWLECEGHINQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQ LVDSFSDIISSKRPRNGFCGKLWH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Potri.018G076500 [exp]	0	1
AT1G71360			Galactose-binding protein (.1)		Potri.019G068900 [exp]	1.00	0.8575
AT5G46910			Transcription factor jumonji (...		Potri.003G096100 [exp]	1.41	0.8431
AT1G19490	bZIP		Basic-leucine zipper (bZIP) tr...		Potri.006G114600 [exp]	2.00	0.8044
AT5G37710			alpha/beta-Hydrolases superfam...		Potri.004G086900 [exp]	2.23	0.7859
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.005G184500 [exp]	4.89	0.7465
AT4G07960		ATCSLC12	CELLULOSE-SYNTHASE LIKE C12, C...		Potri.005G146900 [exp]	6.92	0.8298
AT5G38700			unknown protein		Potri.002G198800 [exp]	8.48	0.7769
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.006G110000 [exp]	9.48	0.7609
AT5G38700			unknown protein		Potri.014G123400 [exp]	9.53	0.7835
AT1G21660			Chaperone DnaJ-domain superfam...		Potri.005G181700 [exp]	9.59	0.7494

Compare expression of checked genes

Potri.018G076500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.