Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HCF101.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24430 835 / 0 HCF101 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) AT4G19540 179 / 1e-51 INDH, INDL IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) AT5G50960 132 / 4e-34 ATNBP35, NBP35 nucleotide binding protein 35 (.1) AT1G36272 65 / 3e-13 unknown protein AT5G24020 45 / 8e-05 ARC11, ATMIND1, MIND ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G220500 [exp] 179 / 3e-52 AT4G19540 414 / 1e-146 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.002G042600 [exp] 174 / 3e-50 AT4G19540 422 / 5e-150 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Potri.001G336900 [exp] 119 / 1e-29 AT5G50960 571 / 0.0 nucleotide binding protein 35 (.1) Potri.004G080100 [exp] 44 / 0.0003 AT5G24020 457 / 9e-163 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043252 [exp] 872 / 0 AT3G24430 817 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10019395 [exp] 798 / 0 AT3G24430 745 / 0.0 HIGH-CHLOROPHYLL-FLUORESCENCE 101, ATP binding (.1) Lus10018779 [exp] 186 / 4e-53 AT4G19540 401 / 9e-140 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10024867 [exp] 186 / 8e-53 AT4G19540 402 / 1e-139 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10039219 [exp] 115 / 5e-28 AT5G50960 566 / 0.0 nucleotide binding protein 35 (.1) Lus10027463 [exp] 115 / 7e-28 AT5G50960 573 / 0.0 nucleotide binding protein 35 (.1) Lus10019468 [exp] 63 / 1e-11 AT4G19540 117 / 2e-32 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10011951 [exp] 62 / 4e-11 AT4G19540 111 / 3e-30 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10025895 [exp] 57 / 5e-09 AT4G19540 107 / 9e-28 IND1(iron-sulfur protein required for NADH dehydrogenase)-like (.1) Lus10038843 [exp] 45 / 0.0001 AT5G24020 501 / 3e-180 ACCUMULATION AND REPLICATION OF CHLOROPLASTS 11, septum site-determining protein (MIND) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF01656 [poplar] [flax] CbiA CobQ/CobB/MinD/ParA nucleotide binding domain CL0232 [poplar] [flax] NifU PF01883 [poplar] [flax] FeS_assembly_P Iron-sulfur cluster assembly protein CL0232 [poplar] [flax] PF06155 [poplar] [flax] GBBH-like_N Gamma-butyrobetaine hydroxylase-like, N-terminal
Representative CDS sequence Show only first row Show all	>Potri.018G076600.11 pacid=42800557 polypeptide=Potri.018G076600.11.p locus=Potri.018G076600 ID=Potri.018G076600.11.v4.1 annot-version=v4.1 ATGCAACTTCTCTATGCTCCAACCTGCCATAACCTCTCCTTGCGAAGCTTACACACGCGACCAAAAGAAGTATGGATCGCGGTCTCTGTTGCAGGGTTGT TCTCATCTCTAGAGAAATGGCTTCATTTATCTGTTAACAATCAGCCTTGTAAACTACCACCTCGTAAATGCTTCTACCTGAAGAAAACCAGAGCTCTTAA TTCCTCTGTCCAAGCTGGCGGTTCTGCAGTATCAACAAGGAATGCTGAGAGTGATGTGCTGAAAGCCTTGTCTCAGATTATTGATCCAGACTTTGGAACT GATATTGTCTCTTGTGGTTTCGTGAAAGATCTCAATATTGATGAAGCTCAAGGAGAGGTCTCATTTCGGTTGGAGCTCACAACACCAGCATGTCCAGTCA AAGACATGTTTGAGCAGAAGGCAAATGAGGTGGTAGCCTTGCTTCCATGGGTCAAGAACGTCAAAGTGACGATGTCAGCACAGCCTGCCAGACCAGTTTA TGCAGGGCAACTTCCCCAAGGGTTGCAGACAATTTCAAATATTATCGCAGTTTCAAGTTGCAAGGGAGGCGTTGGGAAATCAACTGTAGCAGTAAATCTT GCATATACTTTGGCTGGTATGGGTGCTAGAGTAGGCATTTTTGATGCTGATGTCTATGGTCCAAGTTTACCGACAATGGTTTCCCCGGAAAACCGATTGC TGGAGATGAATCCGGAGAAGAGAACTATCATTCCAACTGAATACTTGGGAGTCAAGTTGGTATCTTTTGGATTTGCTGGACAAGGGAGGGCAATAATGCG AGGTCCAATGGTTTCTGGGGTCATCGATCAACTACTGACCACCACTGAATGGGGAGAGCTGGATTACCTTGTTATTGACATGCCTCCAGGAACTGGTGAT ATACAGCTAACTTTATGCCAGGTAGTCCCATTAACTGCTGCTGTTATTGTTACCACACCCCAAAAGCTAGCATTCATCGATGTTGCCAAAGGAGTACGCA TGTTTTCAAAGCTTAAGGTGCCATGCGTTGCTGTAGTAGAGAATATGTGCCACTTCGATGCCGATGGGAAACGCTATTACCCATTTGGTAGAGGTTCAGG TTCTCAGGTTGTCCAGCAGTTTGGAATCCCTCATCTGTTTGATCTTCCGATTAGACCAACTCTATCTGCTTCTGGAGATGGTGGAATGCCTGAAGTGGCG GCTGATCCTCAAGGTGAAGTGGCAAAAATATTTCAGAACCTTGGAATTTGTATTGTGCAACAGTGTGCCAAGATTCGCCAACAAGTGTCAACAGCTGTCA CCTATGATAAATCAATCAAGGCAATTAAGGTGAAGGTGCCGGATTCAGAGGAAGAGTTCCTTTTGCATCCTGCAACAGTGAGACGGAATGATCGCTCTGC TCAAAGTGTGGATGAATGGACCGGGGAGCAAAAACTGCAATATGCTGATGTTCCAGAAGATATTGAACCTGAAGAAATTCGGCCTATGGGAAACTACGCT GTGCAAATAACATGGCCGGATGGATTTAGCCAGATTGCTCCGTATGATCAGTTACAAACAATGGAACGATTGGTTGATGTTCCTGAACCGGCTCCAATTG GGGCATGA
AA sequence Show only first row Show all	>Potri.018G076600.11 pacid=42800557 polypeptide=Potri.018G076600.11.p locus=Potri.018G076600 ID=Potri.018G076600.11.v4.1 annot-version=v4.1 MQLLYAPTCHNLSLRSLHTRPKEVWIAVSVAGLFSSLEKWLHLSVNNQPCKLPPRKCFYLKKTRALNSSVQAGGSAVSTRNAESDVLKALSQIIDPDFGT DIVSCGFVKDLNIDEAQGEVSFRLELTTPACPVKDMFEQKANEVVALLPWVKNVKVTMSAQPARPVYAGQLPQGLQTISNIIAVSSCKGGVGKSTVAVNL AYTLAGMGARVGIFDADVYGPSLPTMVSPENRLLEMNPEKRTIIPTEYLGVKLVSFGFAGQGRAIMRGPMVSGVIDQLLTTTEWGELDYLVIDMPPGTGD IQLTLCQVVPLTAAVIVTTPQKLAFIDVAKGVRMFSKLKVPCVAVVENMCHFDADGKRYYPFGRGSGSQVVQQFGIPHLFDLPIRPTLSASGDGGMPEVA ADPQGEVAKIFQNLGICIVQQCAKIRQQVSTAVTYDKSIKAIKVKVPDSEEEFLLHPATVRRNDRSAQSVDEWTGEQKLQYADVPEDIEPEEIRPMGNYA VQITWPDGFSQIAPYDQLQTMERLVDVPEPAPIGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24430		HCF101	HIGH-CHLOROPHYLL-FLUORESCENCE ...		Potri.018G076600 [exp]	0	1	Pt-HCF101.1
AT3G11210			SGNH hydrolase-type esterase s...		Potri.006G100300 [exp]	1.00	0.9838	CPRD49.3
AT5G08650			Small GTP-binding protein (.1)		Potri.001G305300 [exp]	2.82	0.9784
AT3G51820		PDE325, ATG4, G...	PIGMENT DEFECTIVE 325, UbiA pr...		Potri.006G102100 [exp]	2.82	0.9836
AT5G39830		DEG8, DEGP8	DEG PROTEASE 8, Trypsin family...		Potri.004G129200 [exp]	2.82	0.9748
AT3G07670			Rubisco methyltransferase fami...		Potri.014G169300 [exp]	3.00	0.9830
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Potri.001G044000 [exp]	3.46	0.9761
AT3G06980			DEA(D/H)-box RNA helicase fami...		Potri.010G004700 [exp]	3.74	0.9726
AT1G12800			Nucleic acid-binding, OB-fold-...		Potri.003G124200 [exp]	5.47	0.9741
AT1G31800		CYP97A3, LUT5	LUTEIN DEFICIENT 5, "cytochrom...		Potri.013G088100 [exp]	5.91	0.9749
AT1G54350		ABCD2	ATP-binding cassette D2, ABC t...		Potri.010G176400 [exp]	7.34	0.9701

Compare expression of checked genes

Potri.018G076600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.