Plant FIBer expression Database

Potri.018G077100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G077100.1 pacid=42801419 polypeptide=Potri.018G077100.1.p locus=Potri.018G077100 ID=Potri.018G077100.1.v4.1 annot-version=v4.1
ATGGCATTCTCTAGCTATAAAGCCAGAGAAAGAAAGGCCTCCAGGAGGAAGGGGGAGGACGAACTAAGGACGAAGAGGAGGAAGACCAGGGGACTGAGAG
AAAACCGAGAGAACCAGAGGACGAAAAAGAACAGAGAAAACCCACGAACAGAACACAGCAGGGGAATGAAACACACAGAACACATCAGGAGGAACGAACT
GGGGACGAACTGGGGAAAAAAAAGCAGGGGAAAAACAAGCAAACGCAGAGAGGACGAACGAATGAAAAAAACCCAGGAAAAACAGAGACGACCGGACACA
GAGGAGACACAGATAAAACACAGAGAACACTGGACCAAAGACCACAAACAAAAACACGGACGCAAGAACAGAGATAATACAGAGAAGACGAGCAAAAACA
GAAGGCCACAGGAGAACGAAACACACGCAGAACATGTGGATGTAAAAATAATATTTAAAAATTAA
AA sequence
>Potri.018G077100.1 pacid=42801419 polypeptide=Potri.018G077100.1.p locus=Potri.018G077100 ID=Potri.018G077100.1.v4.1 annot-version=v4.1
MAFSSYKARERKASRRKGEDELRTKRRKTRGLRENRENQRTKKNRENPRTEHSRGMKHTEHIRRNELGTNWGKKSRGKTSKRREDERMKKTQEKQRRPDT
EETQIKHREHWTKDHKQKHGRKNRDNTEKTSKNRRPQENETHAEHVDVKIIFKN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G077100
[exp]
0 1
AT1G32750 GTD1, TAF1, HAF... TBP-ASSOCIATED FACTOR 1, HISTO... Potri.017G047600
[exp]
5.29 0.8976
Potri.010G228883
[exp]
6.00 0.9096
AT1G19480 DNA glycosylase superfamily pr... Potri.002G035300
[exp]
6.48 0.8923
AT1G27700 Syntaxin/t-SNARE family protei... Potri.004G090200
[exp]
9.48 0.8835
AT3G19020 Leucine-rich repeat (LRR) fami... Potri.009G108100
[exp]
10.90 0.8113
AT5G54390 ATAHL, AHL HAL2-like (.1) Potri.004G036400
[exp]
13.30 0.8298
AT3G46130 MYB PFG3, ATMYB111 ... myb domain protein 48 (.1.2.3.... Potri.001G235500
[exp]
15.81 0.8963 Pt-MYB111.2,MYB206
Potri.018G052350
[exp]
18.73 0.8742
AT2G44730 Trihelix Alcohol dehydrogenase transcri... Potri.002G139500
[exp]
19.44 0.8635
AT1G21700 CHB4, ATSWI3C SWITCH/sucrose nonfermenting 3... Potri.005G180800
[exp]
22.13 0.8732 CHB904,CHB4.1

Potri.018G077100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.