Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G433100 [exp] 1248 / 0 ND / Potri.010G156001 [exp] 911 / 0 ND / Potri.001G184575 [exp] 893 / 0 ND / Potri.018G011950 [exp] 329 / 6e-107 ND / Potri.005G134725 [exp] 86 / 6e-20 ND / Potri.016G098775 [exp] 84 / 8e-20 ND / Potri.001G196900 [exp] 67 / 2e-12 ND / Potri.006G157801 [exp] 43 / 0.0003 ND /
Flax homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0523 [poplar] [flax] GAG-polyprotein PF03732 [poplar] [flax] Retrotrans_gag Retrotransposon gag protein
Representative CDS sequence Show only first row Show all	>Potri.018G077983.1 pacid=42802019 polypeptide=Potri.018G077983.1.p locus=Potri.018G077983 ID=Potri.018G077983.1.v4.1 annot-version=v4.1 ATGGAAACTTCTTCGCGTCAATCACCAAGTAAGGCTTCGGGTTTTGGCACCATGTCAGTGATGATGACCGAGACAACATCTTTAGAGGATCAAGTGGCTA CCTTGACAAAACTCGTCGAGGGGCTTTCGACTTCACTCAAGCCAAAAGACCACGATATAACAAAGTTGATGAACAAGCTTAAGAGCATGAACGAAGGAGG CCAAACCTCGGCTACCAAGGCTTTACAAGTAGATCAATTAGATGTCATTGAGGATTCTACAATCGGAGCTGCAAGGAATATACACGGTATTACTGATGGT ATTTTTACCATGAATCAACTGAAAGAACTTATCAAGGAAGCCATCACGGACCAAGTAGAAAGCTCAGTTCAACCCTCATATTCTTATGTAAAGATGCCTC CGAACTATCAACCACCAAAGTTTCAACAATTCGATGGCAAAGGAAATCCTAGGCAACATATAGCTCACTTTGTGGAGACTTGCAACAATGCCGGAACTAA GGGCGATCTCATGGTAAAACAGTTTGTTCGTTCCTTGAAAGGTAATGCCTTTGATTGGTACACTGACTTGGAGTCTGGCTTGATCGATACTTGGGAGCAA CTAGAGCGCGGGTTTCTTAACCGCTTTTACAACACTCGTCATGTGGTTAGCATGATTGAACTCACTAATACACGTCAATGGAAGGAAGAGCTTGTCATTG ACTACATTCATCGGTGGAGAAACCTTAGCCTCAACTGTAGAGATCGGCTCACCGAAACTTCAGCGCTAGACATGTGTATTCAAGGGATGCATTGGGGACT ACGCTATATTTTACAAGGTATCAAACCAAAGTCTTTTGAAGAATTGGCTACTCGAGCACACGACATGGAACTTAGCATTGCGGCGGCTGAAAGCTCATCA TTACCTATGCAAGAGCCAATGAGAAATAAGCTTGAAGGTCATAGATTTGAAAAGAGCACTTCAAAGGTCGAGGGAAATAAATCTTTAGTAGTTAACTCGA CTGCAATAAGGGTACCAGCTGGAGTTAAGAGGAATGATCGGGCGACATCGGCTACTTTTCAAAAAGGTGAAATAAAGAAACCATCCATGAAAGAGCGACA AGAAAAGGTGTATCCATTCCCCGACTCAGACATATCTAGGATGCTGGATGATTTGCTTGAGGCAAATATCATTGAGTTACCGGAGGTGAAACGCCCCAAT GAAGCAAACCAAATGGACAATCCAAACTATTGCAAATACCATTGCTTGATCAGTCATCCCGTAGAGAAGCTACACGAGAATGGGGATATCGTTTTCGATG ATGAAGTAGCAACCTCTAATATCACAACCATGGTCAATTTAGGACCACGCCAGTCACTCCCTACAATAAGTTTTGGCTCCTTTGAACCTATAGAGCTTGG AATCATTTTGCCTATGAGCTTCATTGCATCCTCAAGTCAAACTCCATGTATAACCCTCGCACCTCATGTTGACAACTCGAAACCTGATTCATCTGAAAAT TATGATGACGAAGGATGGATTTTAGTCATACATAGAAGAGGAAGGAAGAGGCGCATGCAGATGACAAAGCCAGCTAGAATGAGGATCTCGACGGTGAGGA AGCTAATTGAGCCGATACGCCGAAAGATTCAACGAAAATCCATACCAGTTAAAAATAAGGGTTTTTCAGCTCAAAGTCTAAGGAAGCTTGTTACACTGGA TGGGTACATGCCAATAGAGACGAGAAGGATTGAAAATGCACTTGCTGCTTGCTATCATATTGATGAAGAGAAAACTCTTATTGAACCTGTCATGAAGGAA AGTCATGCTCACTCTTCAAACTTGGCTCATGGTGTTTGCATAACAGAGATATCCTTCAACGACGAAGACTTGTTGCTTGGATCAAAACTCCATAATCAGT TGCCGTTCATTAAAGGATATGTTGATGAAAAGATGGTGAATCGTATCTTGGTGGATGATGGCTCGGCGGTCAATATACTACCTCTTAAGACTATGAAAGA GCTGGGGATTCCTATGGATGAACTCTTCCCAAGTCATCTGATGATTCAAGGTTTTAATCAAGAAGGGCAAAACGCCATAGGAAAGATAAGGCTTGCGATA CACATGGAAGATATGAAGTTCAATGCACTTTTCCATGTCATAGATGTCAAAACTACTTATAATATGCTACTTGGACGACCATGGATACATGAAAATGGTA TCATCTCCTCAACGCTCCACCAATGTTTTAAGTATTGCCAAGATGGGGGCAACAAATTCCTCTCCAAATGGGATGGCCTTTATGTGGTTCAAGAAGTCTA CACCAATGGAGCTTACAAAATTGTCGATGAGAATGGATTGAGGATTGGGCCTATCAACGGCAAATTCTTGAAAAGATACTATGCTTGA
AA sequence Show only first row Show all	>Potri.018G077983.1 pacid=42802019 polypeptide=Potri.018G077983.1.p locus=Potri.018G077983 ID=Potri.018G077983.1.v4.1 annot-version=v4.1 METSSRQSPSKASGFGTMSVMMTETTSLEDQVATLTKLVEGLSTSLKPKDHDITKLMNKLKSMNEGGQTSATKALQVDQLDVIEDSTIGAARNIHGITDG IFTMNQLKELIKEAITDQVESSVQPSYSYVKMPPNYQPPKFQQFDGKGNPRQHIAHFVETCNNAGTKGDLMVKQFVRSLKGNAFDWYTDLESGLIDTWEQ LERGFLNRFYNTRHVVSMIELTNTRQWKEELVIDYIHRWRNLSLNCRDRLTETSALDMCIQGMHWGLRYILQGIKPKSFEELATRAHDMELSIAAAESSS LPMQEPMRNKLEGHRFEKSTSKVEGNKSLVVNSTAIRVPAGVKRNDRATSATFQKGEIKKPSMKERQEKVYPFPDSDISRMLDDLLEANIIELPEVKRPN EANQMDNPNYCKYHCLISHPVEKLHENGDIVFDDEVATSNITTMVNLGPRQSLPTISFGSFEPIELGIILPMSFIASSSQTPCITLAPHVDNSKPDSSEN YDDEGWILVIHRRGRKRRMQMTKPARMRISTVRKLIEPIRRKIQRKSIPVKNKGFSAQSLRKLVTLDGYMPIETRRIENALAACYHIDEEKTLIEPVMKE SHAHSSNLAHGVCITEISFNDEDLLLGSKLHNQLPFIKGYVDEKMVNRILVDDGSAVNILPLKTMKELGIPMDELFPSHLMIQGFNQEGQNAIGKIRLAI HMEDMKFNALFHVIDVKTTYNMLLGRPWIHENGIISSTLHQCFKYCQDGGNKFLSKWDGLYVVQEVYTNGAYKIVDENGLRIGPINGKFLKRYYA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
					Potri.018G077983 [exp]	0	1
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.019G023016 [exp]	1.41	0.8422
AT5G41840			F-box/RNI-like superfamily pro...		Potri.006G248600 [exp]	3.87	0.7540
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G030300 [exp]	5.29	0.6960
					Potri.011G125251 [exp]	5.47	0.8013
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G030212 [exp]	12.00	0.6550
AT5G05800			unknown protein		Potri.001G370432 [exp]	15.09	0.6854
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.007G137950 [exp]	20.90	0.6623
AT5G05800			unknown protein		Potri.004G127420 [exp]	26.49	0.6774
AT5G53900			Serine/threonine-protein kinas...		Potri.011G116400 [exp]	31.52	0.6732
AT1G65790		ARK1	receptor kinase 1 (.1)		Potri.001G412377 [exp]	31.74	0.5901

Compare expression of checked genes

Potri.018G077983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.