Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G03670 154 / 1e-39 ankyrin repeat family protein (.1) AT4G03500 147 / 2e-37 Ankyrin repeat family protein (.1) AT4G03490 146 / 9e-37 Ankyrin repeat family protein (.1.2) AT4G03470 134 / 6e-33 Ankyrin repeat family protein (.1) AT4G03460 134 / 1e-32 Ankyrin repeat family protein (.1) AT4G05040 131 / 4e-32 ankyrin repeat family protein (.1.2.3.4.5) AT4G03440 128 / 7e-31 Ankyrin repeat family protein (.1) AT4G03480 126 / 4e-30 Ankyrin repeat family protein (.1) AT4G14390 124 / 2e-29 Ankyrin repeat family protein (.1) AT4G03450 114 / 2e-26 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G078200 [exp] 1141 / 0 AT1G03670 157 / 8e-41 ankyrin repeat family protein (.1) Potri.018G077250 [exp] 1050 / 0 AT1G03670 165 / 2e-43 ankyrin repeat family protein (.1) Potri.018G077766 [exp] 1030 / 0 AT1G03670 152 / 4e-39 ankyrin repeat family protein (.1) Potri.018G077633 [exp] 1012 / 0 AT1G03670 159 / 2e-41 ankyrin repeat family protein (.1) Potri.019G101500 [exp] 326 / 3e-102 AT1G03670 212 / 9e-60 ankyrin repeat family protein (.1) Potri.018G077500 [exp] 306 / 1e-101 AT1G03670 54 / 8e-09 ankyrin repeat family protein (.1) Potri.013G133700 [exp] 271 / 2e-81 AT1G03670 197 / 1e-54 ankyrin repeat family protein (.1) Potri.019G101700 [exp] 253 / 5e-75 AT1G03670 182 / 2e-49 ankyrin repeat family protein (.1) Potri.013G133800 [exp] 249 / 3e-73 AT1G03670 177 / 3e-47 ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020209 [exp] 132 / 4e-32 AT1G03670 175 / 6e-47 ankyrin repeat family protein (.1) Lus10038609 [exp] 97 / 9e-22 AT1G10340 142 / 2e-38 Ankyrin repeat family protein (.1.2) Lus10037894 [exp] 95 / 4e-20 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10026833 [exp] 87 / 1e-17 AT4G03500 107 / 4e-04 Ankyrin repeat family protein (.1) Lus10024440 [exp] 86 / 3e-17 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 77 / 2e-14 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10025289 [exp] 76 / 4e-14 AT1G07710 577 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 67 / 2e-11 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 66 / 5e-11 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10020272 [exp] 64 / 2e-10 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.018G078450.1 pacid=42801521 polypeptide=Potri.018G078450.1.p locus=Potri.018G078450 ID=Potri.018G078450.1.v4.1 annot-version=v4.1 ATGCAATTAAAAATAGATATGCCGAGACCAGTACATGAGGAGCTTGAACGATGGAAGGCAGTTAATTTCCCAGTTCCGAAGCCAGACTATGGTTTTTCTG AGCCAAATAAAATACTGCAGAAGGAGTTTTATACCTATGCAAAGGAAGACAACTTCAATGCCTTGTTTGGTCTCGTTTCCGATAAACTGGAACATGTTTC ATCAGAGGAAGTGCTCAATGTCATTTTCAAACATGTTGCTGCCTCTGGAAATTCACTGCTTCATGTGGCAGCAAGCCATGGAAGCGAAGGTGTGACACAG CTACTGTGTCATCACTTCCCCCTCCTAATCACCAGGAAAAATTTCCTGGGTGATAATGCGCTTCATCTGGCTGCCAGGGCTGGACGGTTTGACACAATTC AAAATCTCGTCAAGCATGTGAAAATTGATCCTCATAAAACACTTGAACTTGCTAGCTTGCTGAGGATGAAGAATAATAAAGGAAACACCCCTTTGCATGA TGCAGTCATCAAGGGTTGCCGAGAGGTGGCCTGTTTCCTCGTTAATGAAGACCTAGAAGTTTCCTACCACAAGAACAAGGAAGACAAGTCTCCCTTGTAT TTGGCAGTAGAGAGTTGCGACGAGAAGATGATTGTTTCTCTTATAGAAGCTATGCCGGAAGGAAATTTAGAAAAACTAGCGGACGGCAAGCCGGATATAA TGCTTCCCGAGGACAAAAAAGGGGGAAGTCTCCTTCATCTTGCAGCATCCATGGGCTTCCTTTTTGGAGCAAGACTCCTGGTTAGTCGATGTCCTGTTGC CGCATCACAAAGAAACGAAGAAGGCAACTTACCTATCCATGTTGCATGCCAGAAGGGCGATCTTGAAGTAGTACTCGAACTACTTACTTATTGGTTCGAT CCAATGGATTTTCTCAACGAAAAAGGACAGAATATTCTTCATGTTGCAGCGGAGAGTGGACAGATGAAATTAGTGGAAGAAATACTGGGAAATCGAGATC TGGAAGCACTTATAAATGAGAAGGATTACGATGGAAATACACCTTTGCACTTGGCTGCAATGTATGGCCGTTCTGAGATAGTGCATGCACTAGTGAGAGA CAAGCGGGTGGATACAAGGATTGTTAATAATGAAAAGTTGAAACCATCTGGTGTTGTTGTGAAATTATTGCAAGGCGGACGCTTTGAAGCTCCAAAGTCA GATGGAATGAACAAGCTAATCGATACCAAGCATGAGGATGACGCTGCGAGAGGTGTATGGAACAAATCGCAGAAAGCAGAAGTTCGCAAAATGCGTAAGG TTTTACAAGTTTTGGTGGAGGCAGATGATAAGAATGAGTTTGACAACAATCTTATCTCTGATTTACCAAGAACGACGTTAACGACGGAGGAACTGAACAG AGGGGTAGGGAATCTTCTCGTGGTGGCAGTACTGGTAGTTGGAGTATCCTTCGCTGGTGTTATCACTGTGCCTGGATCAGGTTCTGATCTTAGCAGTGAT AGTTCAAAATATCTGAGGAGCTCTTTTATTGGTTTTGACATGCTAGCTATGAATTTCTCCCTCATCGCCGCTATAATCCTTTGTCGGATATCATTAGGTC GTGCCAGTGATGTAACATCAAGCATGAAGAACGCGACATATTATAATTTTTACTCCCTTTTCTGCATGGGTATAGCATTTACATTCATCCTGCTAATCAC GGTGCAAGAACATACTGGATTTTTCTTAACCATCATCACATCGCATGCCTATCTTTTTTTTATCCAATTAGTTTGTTCCTATGGATTTATGCTTTCAACT GCAAATAAAATAAGGTCTTTCCTGCGTGCAAATCCCTTTAAATTCATGGCTCGAATGAAAAGAAGGATGGATGTACGGACTTCTCTTATGGGTAGAGAAT AG
AA sequence Show only first row Show all	>Potri.018G078450.1 pacid=42801521 polypeptide=Potri.018G078450.1.p locus=Potri.018G078450 ID=Potri.018G078450.1.v4.1 annot-version=v4.1 MQLKIDMPRPVHEELERWKAVNFPVPKPDYGFSEPNKILQKEFYTYAKEDNFNALFGLVSDKLEHVSSEEVLNVIFKHVAASGNSLLHVAASHGSEGVTQ LLCHHFPLLITRKNFLGDNALHLAARAGRFDTIQNLVKHVKIDPHKTLELASLLRMKNNKGNTPLHDAVIKGCREVACFLVNEDLEVSYHKNKEDKSPLY LAVESCDEKMIVSLIEAMPEGNLEKLADGKPDIMLPEDKKGGSLLHLAASMGFLFGARLLVSRCPVAASQRNEEGNLPIHVACQKGDLEVVLELLTYWFD PMDFLNEKGQNILHVAAESGQMKLVEEILGNRDLEALINEKDYDGNTPLHLAAMYGRSEIVHALVRDKRVDTRIVNNEKLKPSGVVVKLLQGGRFEAPKS DGMNKLIDTKHEDDAARGVWNKSQKAEVRKMRKVLQVLVEADDKNEFDNNLISDLPRTTLTTEELNRGVGNLLVVAVLVVGVSFAGVITVPGSGSDLSSD SSKYLRSSFIGFDMLAMNFSLIAAIILCRISLGRASDVTSSMKNATYYNFYSLFCMGIAFTFILLITVQEHTGFFLTIITSHAYLFFIQLVCSYGFMLST ANKIRSFLRANPFKFMARMKRRMDVRTSLMGRE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G03670			ankyrin repeat family protein ...		Potri.018G078450 [exp]	0	1
AT5G27730			Protein of unknown function (D...		Potri.013G016900 [exp]	3.00	0.9237
AT3G51430		SSL5, YLS2	YELLOW-LEAF-SPECIFIC GENE 2, S...		Potri.006G140500 [exp]	3.46	0.9251
AT1G03670			ankyrin repeat family protein ...		Potri.018G077250 [exp]	4.00	0.9140
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Potri.009G100900 [exp]	4.89	0.9214
					Potri.018G138206 [exp]	5.19	0.9124
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.013G035200 [exp]	5.83	0.9001
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.005G192000 [exp]	6.16	0.8984
AT4G35440		CLCE, ATCLC-E, ...	chloride channel E (.1.2)		Potri.004G209900 [exp]	7.74	0.9122
AT4G23900			Nucleoside diphosphate kinase ...		Potri.003G140600 [exp]	9.27	0.8504	Pt-NDK4.1
AT3G14760			unknown protein		Potri.011G103500 [exp]	10.39	0.8878

Compare expression of checked genes

Potri.018G078450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.