Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13227 42 / 3e-06 serine-rich protein-related (.1) AT1G67910 41 / 5e-06 unknown protein AT5G55980 41 / 8e-06 serine-rich protein-related (.1) AT5G20370 40 / 2e-05 serine-rich protein-related (.1) AT3G56500 39 / 3e-05 serine-rich protein-related (.1) AT1G52342 39 / 4e-05 unknown protein AT1G24577 37 / 0.0001 unknown protein AT5G25280 36 / 0.001 serine-rich protein-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G159300 [exp] 117 / 6e-36 AT1G24577 43 / 5e-07 unknown protein Potri.001G371400 [exp] 41 / 2e-05 AT5G55980 50 / 2e-08 serine-rich protein-related (.1) Potri.010G046700 [exp] 39 / 2e-05 AT1G67910 82 / 4e-22 unknown protein Potri.008G186200 [exp] 38 / 8e-05 AT1G67910 85 / 4e-23 unknown protein Potri.006G060700 [exp] 38 / 0.0001 AT5G11090 66 / 4e-14 serine-rich protein-related (.1) Potri.018G079200 [exp] 37 / 0.0002 AT1G67910 45 / 9e-08 unknown protein Potri.018G120300 [exp] 36 / 0.0005 AT5G11090 67 / 1e-14 serine-rich protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023630 [exp] 61 / 1e-13 AT1G67910 44 / 2e-07 unknown protein Lus10043217 [exp] 49 / 4e-09 AT1G52342 48 / 7e-09 unknown protein Lus10034901 [exp] 41 / 8e-06 AT1G67910 49 / 6e-09 unknown protein Lus10023632 [exp] 40 / 2e-05 AT1G67910 48 / 1e-08 unknown protein Lus10026701 [exp] 37 / 0.0001 AT1G67910 56 / 5e-12 unknown protein Lus10006660 [exp] 38 / 0.0002 AT5G25280 144 / 4e-43 serine-rich protein-related (.1.2) Lus10038100 [exp] 38 / 0.0002 AT5G25280 145 / 4e-43 serine-rich protein-related (.1.2) Lus10000442 [exp] 37 / 0.0003 AT1G67910 56 / 1e-11 unknown protein Lus10008811 [exp] 37 / 0.0004 AT5G11090 61 / 2e-12 serine-rich protein-related (.1) Lus10001946 [exp] 37 / 0.0005 AT5G11090 179 / 9e-57 serine-rich protein-related (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G078900.1 pacid=42800654 polypeptide=Potri.018G078900.1.p locus=Potri.018G078900 ID=Potri.018G078900.1.v4.1 annot-version=v4.1 ATGTGTCACCCGCCGGGTGTGCCTTGGGTTAGCAGGAACTTGGTGGTGTATCGAAGATGGCTAGTTTTACAAGCGGTGGAGACAGAAACTGGACATGCAC CGACAGAGGTGGCTGCTACTGGCAGCAGTGCTGTTGCTGGCTCGATAAAGAAGTGTTTGTGTTCTCCCACAAGGCACCCCGGATCCTTCAGGTGCAGGCA CCACCGTTCTGATTATGTGTGGGGTGGGAGAATAACAAGAAGGAAGCAACCTCCTTGA
AA sequence Show only first row Show all	>Potri.018G078900.1 pacid=42800654 polypeptide=Potri.018G078900.1.p locus=Potri.018G078900 ID=Potri.018G078900.1.v4.1 annot-version=v4.1 MCHPPGVPWVSRNLVVYRRWLVLQAVETETGHAPTEVAATGSSAVAGSIKKCLCSPTRHPGSFRCRHHRSDYVWGGRITRRKQPP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13227			serine-rich protein-related (....		Potri.018G078900 [exp]	0	1
AT3G01660			S-adenosyl-L-methionine-depend...		Potri.001G340900 [exp]	5.38	0.9681
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Potri.002G132200 [exp]	9.59	0.9680	Pt-RPS9.2
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.011G124128 [exp]	12.00	0.9623
AT2G34460			NAD(P)-binding Rossmann-fold s...		Potri.011G079600 [exp]	13.56	0.9526
AT3G22690			unknown protein		Potri.013G044700 [exp]	16.30	0.9586
AT3G08740			elongation factor P (EF-P) fam...		Potri.016G136600 [exp]	17.32	0.9605
AT2G46735			unknown protein		Potri.002G178100 [exp]	18.73	0.9553
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Potri.001G186800 [exp]	20.44	0.9568
AT1G55140			Ribonuclease III family protei...		Potri.001G200300 [exp]	22.27	0.9516
AT1G06190			Rho termination factor (.1.2)		Potri.002G037800 [exp]	22.62	0.9546

Compare expression of checked genes

Potri.018G078900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.