Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45130 274 / 1e-94 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) AT4G19640 267 / 6e-92 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT3G54840 213 / 1e-70 ARA6, AtRABF1, Ara-6, AtRab5C Ras-related small GTP-binding family protein (.1.2) AT4G17170 151 / 3e-46 ATRAB-B1B, AT-RAB2, AtRABB1c, AtRab2A ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) AT4G35860 150 / 6e-46 ATGB2, AtRABB1b, Atrab2C GTP-binding 2 (.1.2) AT4G17530 150 / 1e-45 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT4G17160 150 / 1e-45 AtRab2B, AtRABB1a RAB GTPase homolog B1A (.1) AT5G47200 149 / 3e-45 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1) AT1G02130 146 / 3e-44 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT1G16920 145 / 8e-44 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G054900 [exp] 302 / 7e-106 AT4G19640 270 / 4e-93 ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) Potri.012G117800 [exp] 282 / 6e-98 AT5G45130 357 / 1e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.015G113000 [exp] 282 / 9e-98 AT5G45130 339 / 2e-120 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.008G035800 [exp] 210 / 2e-69 AT3G54840 367 / 3e-131 Ras-related small GTP-binding family protein (.1.2) Potri.010G226300 [exp] 209 / 3e-69 AT3G54840 373 / 7e-134 Ras-related small GTP-binding family protein (.1.2) Potri.009G159600 [exp] 152 / 2e-46 AT4G35860 412 / 7e-149 GTP-binding 2 (.1.2) Potri.016G002200 [exp] 150 / 6e-46 AT4G17170 394 / 6e-142 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Potri.003G004100 [exp] 150 / 8e-46 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1) Potri.003G081800 [exp] 148 / 6e-45 AT1G02130 391 / 9e-141 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034903 [exp] 279 / 2e-96 AT5G45130 258 / 2e-88 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10040625 [exp] 259 / 8e-89 AT5G45130 355 / 6e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10038334 [exp] 258 / 2e-88 AT5G45130 349 / 3e-124 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10018285 [exp] 256 / 1e-87 AT5G45130 359 / 3e-128 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10028820 [exp] 208 / 2e-68 AT3G54840 354 / 3e-126 Ras-related small GTP-binding family protein (.1.2) Lus10017462 [exp] 203 / 2e-64 AT3G54840 349 / 1e-121 Ras-related small GTP-binding family protein (.1.2) Lus10036196 [exp] 171 / 3e-55 AT5G45130 214 / 2e-72 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Lus10036198 [exp] 169 / 7e-54 AT4G19640 216 / 8e-73 ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) Lus10025184 [exp] 155 / 8e-48 AT4G17170 389 / 1e-139 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1) Lus10038744 [exp] 150 / 7e-46 AT4G17170 434 / 2e-157 ARABIDOPSIS RAB GTPASE HOMOLOG B1B, RAB GTPase homolog B1C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00025 [poplar] [flax] Arf ADP-ribosylation factor family
Representative CDS sequence Show only first row Show all	>Potri.018G079300.5 pacid=42801329 polypeptide=Potri.018G079300.5.p locus=Potri.018G079300 ID=Potri.018G079300.5.v4.1 annot-version=v4.1 ATGGCAAGGACAGGAAGCAATAACATACAGGCCAAGCTGGTGCTCCTCGGGGACATGGGGACCGGGAAGACAAGTTTGGTACTGAGGTTTGTCAAGGGGC AATTTTTGGAGTTCCAGGAATCAACAATTGGAGCGGCCTTTTTCACTCAAGTTTTGTCATTGAATGAGGCAACTATTAAGTTTGATATATGGGACACAGC TGGGCAGGAACGGTACCATAGCTTGGCACCAATGTACTATCGCGGTGCCGCTGCGGCCGTTGTGGTATACGATATCACAAGCATGGATTCATTTGAACGA GCTAAAAAGTGGGTTACTGAATTGCAAAGACAAGGAAATCCGAATCTGATAATGTTCTTAGTAGGCAACAAGGTTGACTTGCAACAGAAGAGAAAAGTTG GCATCGAGGAAGGTGAGCAGTATGCTAAAGAAAATGGAATGGTATTTCTTGAAACATCTGCGAAAACCGCCCAGAATGTGAACGAGCTTTTTTACGAAAT AGCTAAGAGATTGGCCAAAAAAGCCCCTTCACGTCCAATCGGAATGAAATTGCATAGGAGACCTCAAGAAACTAGAAGAAGAATGTTTTGTTGCTCCTGA
AA sequence Show only first row Show all	>Potri.018G079300.5 pacid=42801329 polypeptide=Potri.018G079300.5.p locus=Potri.018G079300 ID=Potri.018G079300.5.v4.1 annot-version=v4.1 MARTGSNNIQAKLVLLGDMGTGKTSLVLRFVKGQFLEFQESTIGAAFFTQVLSLNEATIKFDIWDTAGQERYHSLAPMYYRGAAAAVVVYDITSMDSFER AKKWVTELQRQGNPNLIMFLVGNKVDLQQKRKVGIEEGEQYAKENGMVFLETSAKTAQNVNELFYEIAKRLAKKAPSRPIGMKLHRRPQETRRRMFCCS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.018G079300 [exp]	0	1
AT1G12550		HPR3	hydroxypyruvate reductase 3, D...		Potri.001G113250 [exp]	1.00	0.9312
AT4G19640		ATRAB-F2B, ARA7...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.003G054900 [exp]	2.44	0.9235
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.008G056400 [exp]	2.44	0.9301
AT2G03430			Ankyrin repeat family protein ...		Potri.002G213200 [exp]	7.48	0.9007
AT1G21000			PLATZ transcription factor fam...		Potri.005G259000 [exp]	8.77	0.9202
AT5G48655			RING/U-box superfamily protein...		Potri.003G148300 [exp]	8.94	0.9092
AT4G27020			unknown protein		Potri.001G424500 [exp]	9.16	0.9136
AT1G34370	C2H2ZnF	STOP1	sensitive to proton rhizotoxic...		Potri.013G114600 [exp]	9.32	0.9005
AT3G51000			alpha/beta-Hydrolases superfam...		Potri.007G018900 [exp]	9.48	0.9070
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.007G112700 [exp]	10.39	0.8938

Compare expression of checked genes

Potri.018G079300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.