Plant FIBer expression Database

Potri.018G079400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G29300 69 / 9e-14 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034904
[exp]
137 / 5e-38 AT3G29300 54 / 2e-08 unknown protein
Lus10023634
[exp]
99 / 1e-23 AT3G29300 52 / 7e-08 unknown protein
PFAM info
Representative CDS sequence
>Potri.018G079400.1 pacid=42801649 polypeptide=Potri.018G079400.1.p locus=Potri.018G079400 ID=Potri.018G079400.1.v4.1 annot-version=v4.1
ATGAAGGGCTCCTCCAAGATCATAATGGGAGCAACACTGGCAATGGTGGTGAGCCTTGCCATTGTTTTGGCCCTAGTTCTGGTGCTGCTAGCTGAGCTTT
ACTGCAGTCTTTTACTTCGCCGGCGTCAACTAAGATCCACCTCCAACACCACCACCACCACCTCTGCCACCACTACCACCACATCCACCACCAATACTTC
CCTGTCGCAGTCACCACAACCCCAGAATCAACCGCCTTCTCTTCCTCTATCAAGCTACTATGCTCAGGGGGTCCTTCGGGCTCCAAAAAGTTTCTTATTC
CCTGCAGTTTCACCCAACAAAGAAAACAAGTCGGCAGAAACAAGAAAAGAACACTCTCAACTTCATCGTGTCCTCGAAGTCCATACCCAAGTATTAAACC
CAGGTCTCAGCCCCCAGCAAATTGGTCTCATAAACATTTCACCTCCATCAACTGCCTTCGTATCTTCACCCCATCAAGTTGAAGAAAACCCTGTTCAAAT
TAGGAGTAGCAATGCCTGTAACGACAGGGAATGTGCTGGTTGTGGAGAACATCTTGTTTACATATCTAATCCCATTTACGACAATGATGCAAGCAGACCA
AGCACGGTGGATACCCCATATGAAACTCCTGATTCTTCACCATCACGTTTGGAAACATGCGGTTCTAGTTCAGGTGAAGAAGAAATAGCCTTACCATCCC
CATCTGCTCCACATTCAGTCCCCGGGACCCCTCCATTGACTCCAATGAAGAAGCTCCCAGCTAAGGCTTGTTCAGTTTCATTGAGAGATGCAAGGTCTCT
GGGCACTTCAGGGAGCGATTCTGTTAGTAACAATGGCCTCTCATCATCATCCTCAGGCTCTCCATGCACATCTCCTTCATGGTGA
AA sequence
>Potri.018G079400.1 pacid=42801649 polypeptide=Potri.018G079400.1.p locus=Potri.018G079400 ID=Potri.018G079400.1.v4.1 annot-version=v4.1
MKGSSKIIMGATLAMVVSLAIVLALVLVLLAELYCSLLLRRRQLRSTSNTTTTTSATTTTTSTTNTSLSQSPQPQNQPPSLPLSSYYAQGVLRAPKSFLF
PAVSPNKENKSAETRKEHSQLHRVLEVHTQVLNPGLSPQQIGLINISPPSTAFVSSPHQVEENPVQIRSSNACNDRECAGCGEHLVYISNPIYDNDASRP
STVDTPYETPDSSPSRLETCGSSSGEEEIALPSPSAPHSVPGTPPLTPMKKLPAKACSVSLRDARSLGTSGSDSVSNNGLSSSSSGSPCTSPSW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G29300 unknown protein Potri.018G079400
[exp]
0 1
AT2G32980 unknown protein Potri.014G158000
[exp]
8.77 0.9130
AT3G07950 rhomboid protein-related (.1) Potri.010G220900
[exp]
12.96 0.9124
AT4G02580 NADH-ubiquinone oxidoreductase... Potri.005G218000
[exp]
12.96 0.9049
AT2G35110 NAPP, GRL, NAP1 NCK-ASSOCIATED PROTEIN 1, GNAR... Potri.015G124200
[exp]
15.87 0.8943
AT3G09800 SNARE-like superfamily protein... Potri.001G197200
[exp]
16.52 0.9067
Potri.001G466500
[exp]
20.85 0.8956
AT1G28490 OSM1, ATSYP61, ... syntaxin of plants 61 (.1.2) Potri.011G059700
[exp]
29.58 0.8763 SYP61.2
AT3G57090 FIS1A, BIGYIN FISSION 1A, Tetratricopeptide ... Potri.009G047300
[exp]
30.19 0.8807
AT2G32580 Protein of unknown function (D... Potri.014G155600
[exp]
30.85 0.8931
AT1G35720 ATOXY5, ANNAT1 annexin 1 (.1) Potri.002G095600
[exp]
34.49 0.8835 ANNAT1.1

Potri.018G079400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.