Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32350 240 / 1e-69 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G79910 208 / 4e-61 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G52315 148 / 1e-39 Regulator of Vps4 activity in the MVB pathway protein (.1) AT4G35730 124 / 5e-30 Regulator of Vps4 activity in the MVB pathway protein (.1) AT1G25420 113 / 2e-27 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) AT1G34220 113 / 4e-26 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT2G19710 105 / 2e-23 Regulator of Vps4 activity in the MVB pathway protein (.1) AT2G14830 95 / 2e-20 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT4G29440 94 / 1e-19 Regulator of Vps4 activity in the MVB pathway protein (.1.2) AT1G13340 84 / 7e-17 Regulator of Vps4 activity in the MVB pathway protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G181300 [exp] 210 / 5e-60 AT1G79910 244 / 1e-75 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054500 [exp] 201 / 5e-57 AT1G79910 216 / 4e-65 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054601 [exp] 145 / 3e-37 AT1G79910 140 / 3e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.003G054700 [exp] 140 / 1e-35 AT1G79910 141 / 1e-37 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.007G059800 [exp] 126 / 7e-31 AT4G35730 385 / 7e-130 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.013G117100 [exp] 120 / 2e-28 AT1G34220 357 / 2e-115 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.006G149800 [exp] 119 / 1e-27 AT2G19710 300 / 3e-86 Regulator of Vps4 activity in the MVB pathway protein (.1) Potri.008G121300 [exp] 114 / 1e-27 AT1G25420 361 / 3e-125 Regulator of Vps4 activity in the MVB pathway protein (.1.2.3) Potri.013G135700 [exp] 116 / 6e-27 AT2G14830 228 / 2e-67 Regulator of Vps4 activity in the MVB pathway protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023635 [exp] 523 / 1e-178 AT4G32350 252 / 9e-74 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10034905 [exp] 512 / 1e-174 AT4G32350 256 / 3e-75 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10025932 [exp] 201 / 6e-55 AT5G48840 440 / 2e-149 ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, homolog of bacterial PANC (.1) Lus10011455 [exp] 180 / 4e-51 AT1G79910 233 / 1e-73 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10035885 [exp] 182 / 2e-50 AT1G79910 235 / 1e-72 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10025779 [exp] 165 / 5e-44 AT1G79910 199 / 8e-59 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10037536 [exp] 160 / 1e-43 AT1G79910 191 / 2e-57 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Lus10028383 [exp] 123 / 1e-29 AT4G35730 415 / 2e-142 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10041836 [exp] 122 / 3e-29 AT4G35730 423 / 2e-145 Regulator of Vps4 activity in the MVB pathway protein (.1) Lus10000978 [exp] 115 / 2e-26 AT2G19710 308 / 6e-89 Regulator of Vps4 activity in the MVB pathway protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03398 [poplar] [flax] Ist1 Regulator of Vps4 activity in the MVB pathway
Representative CDS sequence Show only first row Show all	>Potri.018G079500.4 pacid=42801282 polypeptide=Potri.018G079500.4.p locus=Potri.018G079500 ID=Potri.018G079500.4.v4.1 annot-version=v4.1 ATGCTGGACGGGATTCTAGGCCGAGGATCTGGTGCAAAATGTAAATCGCTGATAAAGTCGACGAAGAATCAGATCGAAGTGGTAAGAAGAAAGAGAAATG CGACTTTGAAGTATTTGAAGAAAGATATGGCTGATCTCCTTGCTAATGGCCTCGACATCAATGCTTATGGCAGAGCTGAGGGACTGCTAGCTGAATTGGA CCAATTGTCTTGCTATGATTTTGTTGAGCAATTTTGTGATTTCGTGTTGAAACATCTATCAGTCATGCAGAAATTGAGGCACTGTCCTGAGGACTGTAGG GAGGCTGTTTCATCCCTGATGTTTGCTGCTGCAGGATTAAACAATTTGCCAGAGCTACGCGACCTTAGAGATGTATTTTATGAGAGATATGGGAGTTCTC TGGAATTGTTTGTGAATCAAGAGTTTCGTGAAAAGCTATCGTCAAAGTTTGTGACGACGGAGAAGAAAATTCAGTTAATGCAAAATATAGCATCGGAGTT CTGCATAACATGGGACTCCAATGCATTTCAACAGAGGATGGCCAAAACCCCAGAATCTAAAAAGGACAATCATGGGTGTTTACACAGCAATGATGACAGA TACATGCCTAATAATGACAAGGACACCATCCCAAAAGGACATAAACATGATTTTCCATCGAAAGAAAGACTTGAATGTGACAAACACGAGCCAGTCAGGG CCAGGGAAGAAATTGTCTTTAGAAGGGACAACCGGGACATTCTGTTCCAGGGAAGGCAAGAAGCCACGCTGGAGAAACATCAACCTTGGAAGGAGGATAC TCCCCTGAAAACTGTTAGACTAGGTAGTTCATCTCAAAGGAAAAGAATGGAAAGTGTGGATGGTGGATCCAAAATGCTAGATGGTAGGGAGAATTCTGCT CCTAAAAGGGATGACAAGGACACAATAATTCGTGGAAAGCCAGATATCACTCCTAGTTATGGAGGATTATGGTCAAACAATGATTCATTGACAGCACACA ACAATTATGGTGGACAACACAAAATGGAAAACTCAACAAGAGATGTTTTGAAGGAAGAAGCACATAAGCTGAAACCTTACTATAACAATGCTATCCCCCC TCCCTACACTAAAACTAATTCTAAACTGAAGGATACCAGACATGGAGCCAGTGTAGGGTCTTCCCAGATTGGTTCTGACATTAATGCAGTTCAGAAAGAT CCTTCAAGGGATAACATAGCCAATTCTTGGAACAGCTCGGAGAAAATCCAACAAGGATCATATCTGCCGGATCATGAGAAGCAGAATGTTGGACTTACAA GACAAGATGATCATGGACATGAGAAAAGTAATTATTATCAGAATGATGGTATTGGTAACCCCATACCAAAACCAAGATCCATGAGGCGGAGACACTCAAA GTCACACTCCACTCATGATGATGCTGGAAATTCGGAAGATACAGGTGGTGTGAAGAGAAGGTCAAGGAGCAGGAGAAGGGGGGATGACTCAAGAAAAGGC CTGCAAATCTTGTTTGATGATGAACACTATCAGAATGATGAAGAAGAAAGGATGATAGATAAACTTTTGATACATTACAGCAAGAAACCTTCTGCGTTTG AACCTGGAAATGTGGTGAGAAGAAAGTCAAAAAGCCGTCACCCACATCAGCAAGGCACTACCGAGGCAGATAAATCCCCACGACATACCAGCAGGGACGG GCCTGATGAAATCTCAGAGACGGTTTCTGCACCACCCCGATCCATTTCACTTCCTCATGAAACAAATTCATCAGAGGCAATGAAATTGTTTACTCGAGCT GCTTCTTTTCAGCCAGACAGATCAACCGCAGCTCGGCATGTGCATCCTAAGTTACCAGATTACGACGACCTGGCAGCCCGTTTTGCAGCCTTGAAGGGGA GGTAA
AA sequence Show only first row Show all	>Potri.018G079500.4 pacid=42801282 polypeptide=Potri.018G079500.4.p locus=Potri.018G079500 ID=Potri.018G079500.4.v4.1 annot-version=v4.1 MLDGILGRGSGAKCKSLIKSTKNQIEVVRRKRNATLKYLKKDMADLLANGLDINAYGRAEGLLAELDQLSCYDFVEQFCDFVLKHLSVMQKLRHCPEDCR EAVSSLMFAAAGLNNLPELRDLRDVFYERYGSSLELFVNQEFREKLSSKFVTTEKKIQLMQNIASEFCITWDSNAFQQRMAKTPESKKDNHGCLHSNDDR YMPNNDKDTIPKGHKHDFPSKERLECDKHEPVRAREEIVFRRDNRDILFQGRQEATLEKHQPWKEDTPLKTVRLGSSSQRKRMESVDGGSKMLDGRENSA PKRDDKDTIIRGKPDITPSYGGLWSNNDSLTAHNNYGGQHKMENSTRDVLKEEAHKLKPYYNNAIPPPYTKTNSKLKDTRHGASVGSSQIGSDINAVQKD PSRDNIANSWNSSEKIQQGSYLPDHEKQNVGLTRQDDHGHEKSNYYQNDGIGNPIPKPRSMRRRHSKSHSTHDDAGNSEDTGGVKRRSRSRRRGDDSRKG LQILFDDEHYQNDEEERMIDKLLIHYSKKPSAFEPGNVVRRKSKSRHPHQQGTTEADKSPRHTSRDGPDEISETVSAPPRSISLPHETNSSEAMKLFTRA ASFQPDRSTAARHVHPKLPDYDDLAARFAALKGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32350			Regulator of Vps4 activity in ...		Potri.018G079500 [exp]	0	1
AT1G11125			unknown protein		Potri.011G045700 [exp]	14.86	0.7756
AT5G25530			DNAJ heat shock family protein...		Potri.006G246700 [exp]	15.36	0.7671
AT2G30933			Carbohydrate-binding X8 domain...		Potri.005G003500 [exp]	25.92	0.7298
AT3G63460		EMB2221	transducin family protein / WD...		Potri.009G055400 [exp]	35.70	0.7298
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Potri.002G179100 [exp]	43.86	0.7305
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Potri.018G097000 [exp]	71.58	0.6946
AT4G24180		ATTLP1	THAUMATIN-LIKE PROTEIN 1 (.1)		Potri.005G241000 [exp]	76.48	0.6870
AT3G21680			unknown protein		Potri.014G153200 [exp]	82.82	0.6913
AT2G34920		EDA18	embryo sac development arrest ...		Potri.003G156400 [exp]	92.95	0.6937
AT5G18520			Lung seven transmembrane recep...		Potri.006G214900 [exp]	105.40	0.6836

Compare expression of checked genes

Potri.018G079500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.