Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G16060 755 / 0 ATP binding microtubule motor family protein (.1) AT3G16630 617 / 0 ATKINESIN-13A, KINESIN-13A P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G18550 204 / 2e-56 ATP binding microtubule motor family protein (.1) AT5G60930 193 / 1e-51 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G49650 185 / 2e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G28620 186 / 3e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G47820 186 / 4e-49 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G45850 184 / 2e-48 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G37420 181 / 2e-47 ATP binding microtubule motor family protein (.1) AT3G50240 171 / 2e-44 KICP-02 ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G182300 [exp] 773 / 0 AT3G16060 990 / 0.0 ATP binding microtubule motor family protein (.1) Potri.003G053800 [exp] 769 / 0 AT3G16060 1010 / 0.0 ATP binding microtubule motor family protein (.1) Potri.008G221400 [exp] 622 / 0 AT3G16630 1167 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G013500 [exp] 618 / 0 AT3G16630 1141 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.008G223000 [exp] 381 / 1e-125 AT3G16630 574 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.012G058400 [exp] 202 / 4e-55 AT1G18550 872 / 0.0 ATP binding microtubule motor family protein (.1) Potri.016G082400 [exp] 186 / 4e-49 AT3G45850 1107 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.005G150800 [exp] 184 / 1e-48 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.002G123500 [exp] 182 / 6e-48 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037546 [exp] 738 / 0 AT3G16060 994 / 0.0 ATP binding microtubule motor family protein (.1) Lus10011449 [exp] 704 / 0 AT3G16060 983 / 0.0 ATP binding microtubule motor family protein (.1) Lus10002876 [exp] 619 / 0 AT3G16630 1127 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10023103 [exp] 613 / 0 AT3G16630 1121 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019245 [exp] 201 / 2e-55 AT3G49650 816 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10011579 [exp] 201 / 1e-54 AT3G49650 950 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10009073 [exp] 189 / 4e-50 AT3G45850 1019 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010047 [exp] 181 / 1e-47 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10000762 [exp] 179 / 1e-46 AT5G60930 1498 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10025304 [exp] 178 / 1e-46 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain
Representative CDS sequence Show only first row Show all	>Potri.018G079800.1 pacid=42802035 polypeptide=Potri.018G079800.1.p locus=Potri.018G079800 ID=Potri.018G079800.1.v4.1 annot-version=v4.1 ATGAACGTTGTAGGGAGACGACAGATGCCGAGATCGAATTCGACGACGGCGCATCACCACCGTCAGTACTCGGATAATTTCCTGGACAGTAGTAGATGGC TTCTTCAGTCATCTTCACAGGACTTTGGACACAGGTCAAGATCATCGAGTCTAAGAAAGATCGGAGATGATCAGTTCAGTCCTGGTCTATTCGATCTCCA TTCTTTTGATACTGACTTGTTGCCAGAGCTAAAACCACTTAATCAAGCAGCAGCTGCAAGTCGAGGTGAAAATAATAACCTTACTAAAAGTATGTCTTTG GACAAGGAAAGATTGAACAGCAACAACAATGTTGCAAAGATCAAAGTTGTGGTACGTAAGAGACCGTTAAACAAAAAGGAGATAGCAAAGAAAGAGGAAG ACATCATCACCATCGAATCGAATTCGAATTCGAATTCTCTCACAGTTCATGAAACCAAACTCAAGGTTGATTTGACTGAATATGTTGAGAAACATGAATT TGTTTTTGATGCGGTGCTGAATGAAGGTGTTTCGAATGATGAAGTGTACTCCCAGACTGTTCAACCAATAGTTCCTCTAATTTTCCAGCGAACAAAAGCA ACTTGCTTTGCATATGGGCAAACAGGGAGTGGAAAGACTTATACCATGCAACCGCTGCCTCTCAAAGCATCCCAAGACATATTAGGATTGATGCGCCATA CATATTGGAACCAAGGCTTTCAATTGTTTGTCAGTTTCTTTGAGATATATGGAGGGAAACTATTTGATCTCCTCAATGATCGGAAAAAGCTGTGCATGAG GGAGGATGGGAAACAACAGGTCTGCATTGTTGGTTTGCAAGAATACAGAGTTTCAGATGTTGAGGCAATTAGGGAGTTCATTGAGAAAGGAAATGCCACA AGAAGCACTGGCACAACTGGTGCAAATGAGGAATCCTCCCGATCACATGCTATACTTCAGCTTGCCATCAAGAAGTCAGCCAATGGCTCTGACTCAAAGC CTTCCCGGTTAGTGGGAAAATTGTCTTTTATAGATCTTGCTGGAAGTGAGCGCGGGGCAGATACTACTGATAATGATAAACAGACAAGAATAGAAGGTGC TGAAATTAATAAGAGCTTACTCGCCCTGAAAGAATGTATCAGAGCTCTTGACAGTGACCAGGGTCACATACCCTTCAGAGGCAGTAAGCTGACAGAAGTT CTCAGAGATTCATTTGTTGGTGACTCCCGCACTGTTATGATATCATGTATTTCACCAAGCTCAGGATCATGTGAACACACTCTCAACACTCTCAGATATG CTGATAGGGTTAAGAGTCTATCAAAAGGGAACAACTCCAAGAGGGATCCATTGTCTTCTTCCAACCTTAGGGAATCAACTACCTTGCCCTTGACTTCATT TTCACCATCTGAACCAACCTTTGTAGATAGCATAGCTGATTTTCCCAATGAAAAGAGCAGGTTTGGATGGTCAAGACCAACTGAGAGAGAAACATCTCCA CCTTTTAATATGGACCGTGTTCCAAGCGGAAGGGCAGAGGGAAATTTATCTGCATCTGTTCAAACAGATTATTACAAGGTCCAGAGTGTTGGTCAAAGTG GCATCATTGCTAATGATTGCAATTACACTGAAGAATCCTATGAACATGAAAAACCATCATGGATGAATAATAATAAGAAGGTAGACACCTTCCAAAAATC AGCTTTGGAGGATAGGCGGAGAACAGATACTCTGATGAAACAGAGGGATGTCCTTGCAGTTCAGGCTAACAATTCTCATTCAGATGATGAACTTAATGTC CTGTTGAAGGAAGAGGAAGATCTTGTATCTGCGCACCGAAAACAAGTGGAGGAGACAATAGACATTGTTAGGGAGGAGATGGACTTGCTTGCTGAAGCTG ACCAACCAGGCAATCAACTTGATGAATATATCTCCAAGTTAAATGCCATTCTTTCACAGAAGGCTGCAGGAATAGTACAACTGCAGACCCGTTTGGCTCA ATTCCAGAAACTTATGAATGAGTATAATGTTTTAGTATCATAA
AA sequence Show only first row Show all	>Potri.018G079800.1 pacid=42802035 polypeptide=Potri.018G079800.1.p locus=Potri.018G079800 ID=Potri.018G079800.1.v4.1 annot-version=v4.1 MNVVGRRQMPRSNSTTAHHHRQYSDNFLDSSRWLLQSSSQDFGHRSRSSSLRKIGDDQFSPGLFDLHSFDTDLLPELKPLNQAAAASRGENNNLTKSMSL DKERLNSNNNVAKIKVVVRKRPLNKKEIAKKEEDIITIESNSNSNSLTVHETKLKVDLTEYVEKHEFVFDAVLNEGVSNDEVYSQTVQPIVPLIFQRTKA TCFAYGQTGSGKTYTMQPLPLKASQDILGLMRHTYWNQGFQLFVSFFEIYGGKLFDLLNDRKKLCMREDGKQQVCIVGLQEYRVSDVEAIREFIEKGNAT RSTGTTGANEESSRSHAILQLAIKKSANGSDSKPSRLVGKLSFIDLAGSERGADTTDNDKQTRIEGAEINKSLLALKECIRALDSDQGHIPFRGSKLTEV LRDSFVGDSRTVMISCISPSSGSCEHTLNTLRYADRVKSLSKGNNSKRDPLSSSNLRESTTLPLTSFSPSEPTFVDSIADFPNEKSRFGWSRPTERETSP PFNMDRVPSGRAEGNLSASVQTDYYKVQSVGQSGIIANDCNYTEESYEHEKPSWMNNNKKVDTFQKSALEDRRRTDTLMKQRDVLAVQANNSHSDDELNV LLKEEEDLVSAHRKQVEETIDIVREEMDLLAEADQPGNQLDEYISKLNAILSQKAAGIVQLQTRLAQFQKLMNEYNVLVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G16060			ATP binding microtubule motor ...		Potri.018G079800 [exp]	0	1
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Potri.002G043500 [exp]	4.58	0.7707	Pt-WRKY21.2
AT1G34210		ATSERK2, SERK2	somatic embryogenesis receptor...		Potri.007G082400 [exp]	5.91	0.8191
AT4G37750	AP2_ERF	DRG, CKC1, ANT	DRAGON, COMPLEMENTING A PROTEI...		Potri.014G012200 [exp]	6.40	0.8360
AT4G03415			Protein phosphatase 2C family ...		Potri.019G103100 [exp]	9.79	0.7905
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.006G025900 [exp]	10.58	0.7939	AGO913
AT3G49810			ARM repeat superfamily protein...		Potri.006G277700 [exp]	12.72	0.8001
AT5G58630			unknown protein		Potri.009G046900 [exp]	13.85	0.7746
AT1G71830		ATSERK1, SERK1	somatic embryogenesis receptor...		Potri.005G083300 [exp]	14.24	0.7613
AT3G25560		NIK2	NSP-interacting kinase 2 (.1.2...		Potri.010G134100 [exp]	17.32	0.8270
AT4G29080	AUX_IAA	IAA27, PAP2	indole-3-acetic acid inducible...		Potri.001G186100 [exp]	18.73	0.7041

Compare expression of checked genes

Potri.018G079800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.