Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24520 246 / 1e-79 HSF AT-HSFC1 heat shock transcription factor C1 (.1) AT3G22830 161 / 4e-46 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT4G17750 162 / 8e-46 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT2G26150 159 / 1e-45 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G02990 160 / 6e-45 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT5G16820 160 / 7e-45 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G51910 151 / 1e-43 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT1G32330 156 / 2e-43 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT1G67970 150 / 3e-42 HSF AT-HSFA8 heat shock transcription factor A8 (.1) AT5G03720 150 / 5e-42 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G048200 [exp] 168 / 5e-49 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.001G138900 [exp] 166 / 4e-47 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.005G214800 [exp] 162 / 6e-47 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.003G095000 [exp] 164 / 3e-46 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.008G157600 [exp] 159 / 7e-46 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G226800 [exp] 157 / 1e-44 AT2G26150 355 / 1e-121 heat shock transcription factor A2 (.1.2) Potri.010G082000 [exp] 151 / 8e-43 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.004G062300 [exp] 152 / 1e-42 AT4G18880 382 / 1e-130 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1) Potri.014G141400 [exp] 152 / 3e-42 AT4G18880 251 / 4e-79 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A4A, heat shock transcription factor A4A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034907 [exp] 258 / 1e-84 AT3G24520 254 / 3e-83 heat shock transcription factor C1 (.1) Lus10023636 [exp] 257 / 2e-84 AT4G17750 254 / 4e-83 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) Lus10000312 [exp] 174 / 3e-50 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 171 / 3e-49 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10040091 [exp] 169 / 2e-48 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10030956 [exp] 169 / 2e-48 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10006618 [exp] 160 / 9e-46 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10013797 [exp] 157 / 3e-45 AT2G26150 314 / 5e-106 heat shock transcription factor A2 (.1.2) Lus10039376 [exp] 157 / 1e-44 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10040911 [exp] 156 / 1e-43 AT5G16820 370 / 4e-124 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00447 [poplar] [flax] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Potri.018G079901.1 pacid=42801045 polypeptide=Potri.018G079901.1.p locus=Potri.018G079901 ID=Potri.018G079901.1.v4.1 annot-version=v4.1 ATGATGGAGGCTAATAACAACAATAACATCGTAGCACCCTTTGTTTTGAAGATTTATCAGATGGTCAGTGATCCAACAACGGATTCTCTAATTTCCTGGG GCAGAGCAAACAACAGTTTCATCGTCATCGACCCTTTAGATTTCTCTCAGAGGATTTTGCCTGTTTACTTCAAACACAACAACTTCTCTAGCTTTGTTCG ACAGTTGAACACCTATGGTTTTAGAAAAGTCGATCCAGATAGATGGGAATTTGCAAACGAATGGTTTCTTAGAGGGCAAAAGCAATTGCTGAAGAATATA GTTCGCAGGAAGCATAGTTCTAATAATAAAGGGTCATCATATATGCAAGTAAATATAAAAGGTGAAGACTTCGATGATGAAGATATAATTATGGAGATAG CAAGGTTAAAGCAAGAACAGAAGGCCTTAGAGCAAGAACTTGAAGGCATGAACAAGCGTTTAGAGGCGACGGAAAGACGTCCACAACAAATGATGGCTTT TATCTATAAAGTTGTTGAAGACCCGGATCTCCTTCCTCGTATGATTCTTGAAAAGGAACGTACAAGGCAGATAAAAGACAAGAAACAACGTTTGATGATA TCTTCTTCGGCGACATCACCTTCTGGCATGGCAATTTCAAGTACTTCAACAATAATAAAGTCTGAAGTGGTTCATGAAGAGGGTTCTATAGGGGTAATAT CTTCACCAGAAACTGTTTTTAATGTAGATAAATTTTGTCAATCTTCACCCTCACCTGATGAGTCAGATATTAACGCTATAGGATGGTTAGATCAAGTAAA CTATGGTCTTGCCGTGGCAGGACCTAGTCCATTTACAACAGGCTCAATGGGTGCAGGGATTGGGGCAACGGTGGCAGTGTTGCCGCAAGGGAATAGTACT GTGATAGGATATGGTGGTGATTGGGGTGACCACATAAACTATTTTGGAGAAATGGCGGCGGGAGTGGAGGATAGGCCACGACCGTCTTATCCATTTTCAC TTTTGGGAGGTGGCTTTTAG
AA sequence Show only first row Show all	>Potri.018G079901.1 pacid=42801045 polypeptide=Potri.018G079901.1.p locus=Potri.018G079901 ID=Potri.018G079901.1.v4.1 annot-version=v4.1 MMEANNNNNIVAPFVLKIYQMVSDPTTDSLISWGRANNSFIVIDPLDFSQRILPVYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEWFLRGQKQLLKNI VRRKHSSNNKGSSYMQVNIKGEDFDDEDIIMEIARLKQEQKALEQELEGMNKRLEATERRPQQMMAFIYKVVEDPDLLPRMILEKERTRQIKDKKQRLMI SSSATSPSGMAISSTSTIIKSEVVHEEGSIGVISSPETVFNVDKFCQSSPSPDESDINAIGWLDQVNYGLAVAGPSPFTTGSMGAGIGATVAVLPQGNST VIGYGGDWGDHINYFGEMAAGVEDRPRPSYPFSLLGGGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G24520	HSF	AT-HSFC1	heat shock transcription facto...		Potri.018G079901 [exp]	0	1
AT5G17300	MYB	RVE1	REVEILLE 1, Homeodomain-like s...		Potri.004G074300 [exp]	2.00	0.8305
AT5G35460			unknown protein		Potri.006G145600 [exp]	2.23	0.8477
AT3G22560			Acyl-CoA N-acyltransferases (N...		Potri.007G102900 [exp]	7.74	0.8150
AT4G18593			dual specificity protein phosp...		Potri.006G040300 [exp]	12.96	0.7833
AT1G78080	AP2_ERF	CAF1, RAP2.4, W...	wound induced dedifferentiatio...		Potri.005G168700 [exp]	14.96	0.8038
AT2G41870			Remorin family protein (.1)		Potri.014G058900 [exp]	22.31	0.8095
AT3G01990		ACR6	ACT domain repeat 6 (.1)		Potri.001G327000 [exp]	23.10	0.8213
AT2G27090			Protein of unknown function (D...		Potri.009G159000 [exp]	25.69	0.7944
AT4G39330		AtCAD1, ATCAD9	cinnamyl alcohol dehydrogenase...		Potri.001G372400 [exp]	29.39	0.7582
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.012G038700 [exp]	31.04	0.8166	Pt-ATCNGC19.3

Compare expression of checked genes

Potri.018G079901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.