Plant FIBer expression Database

Potri.018G080900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G19540 597 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034912
[exp]
613 / 0 AT5G19540 570 / 0.0 unknown protein
Lus10023641
[exp]
600 / 0 AT5G19540 548 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.018G080900.1 pacid=42801257 polypeptide=Potri.018G080900.1.p locus=Potri.018G080900 ID=Potri.018G080900.1.v4.1 annot-version=v4.1
ATGGTCTCAAGTTCCCTCTCGATAATACTCTCACTGCCCGCCTCTTCAATTCCTTCAAATTCAACCTCTGATTTGTATTCCACCTCCACTCCTCTCAGGT
CGATACTAGAGTTTAAAAACAACTCTAAACCCATCAAAACTTCTCCTATTTTTCGCCTCTCTCTTCAGCAATCTTCAAGAATATTGGCCTTTTCTTCTTC
TAATAAAAACAATAATCAAGATGGGTCAGCAGAGCAGTTCCTGGAAAACAACTCGATTGCGGATTTCATGAGGTTCAAGAAAGGCTCTGACAGAAGCAGT
GCTGAGTTGCAGACTGCTGTTGTTAGTTATAAAAAGAGATTCCCTTGGTCCATTCTTTACCCTTTTTTTCAGGTTGATTTGGTTTCTACAATTCACATTG
CGGATAAAGAATACTTTGAGACCATCCAGAAGGAACTTGAACCATATGATCGTGTCCTTTACGAGATGGTGGCTAGCAGGGAGAGTTTGGAAAGTAGAAG
AAATACTGCTGTTGCAAAGAGAATGAAAGGTTCACGCTCAAGAGGATTTAACATTCTGGGGTGCATTCAGCGACAAATGGCTCGAATCCTTACGCTTGAT
TTTCAATTAGACTATCTTGATTACCAGGCTGAGAATTGGTATCATGCAGATCTTGACTATGAGACCTTCAAGATACTTCAGCTAGAAAAGGGTGAAAGTT
TCTTGACATTTGCAAGAGATATGACTCTTAAATCAACAAAAGCCATGGTGCAGCCTGCGATTCCAGAAGACCTTGGTCCTTGGAGATCCAAACTTCTATG
GGCTTCTCGCGTGCTTCCCATGCCACTTGTAGGCCTTTTCATTATTGGAACTGTTTGTGACACGGGAAGTCCTGCATCAGAATATCCAGAGCTAGAAGCC
TTATCCAGGCTCGATTTTGGCGCTGCTGTGAAGGTGTTCCTTGCAAAGCGATTAACATCTGAGTTCACACAAGTGACAGCAGATTTAGAAGAGGAATCGG
TCATCATCGGTGAGAGGAACAAAGCAGCAGTTGAAGCACTTAGAAGAGCTATCAACGAGGGCCATAATAAGATTGCCATACTGTATGGAGGTGGCCACAT
GCCAGACCTGGGAAGGCGCTTGCGAGAGGAATTCGACTTGGTCCCTTGCGGAGTGCAATGGATAACAGCTTGGTCTATAAGGAACCGGGTTTTGAATAGC
AATTCCCTTCCATTTCTGAGAACAATGGCTGAAGTTTTGGGTTGGCCATTGAACCGCTACCAGACATTGGCATTGCTCATCTTTTCATCAGTCCTGGCAA
TAGATCTTTGGTTCTGGGAGCTCTTTTTTGGAAGTACAGTGAATTGGATCTCGCAAATTGCTTCAGAAGTTGGGCAATATGTGAACAACTCACGGATGAT
TTGGTAA
AA sequence
>Potri.018G080900.1 pacid=42801257 polypeptide=Potri.018G080900.1.p locus=Potri.018G080900 ID=Potri.018G080900.1.v4.1 annot-version=v4.1
MVSSSLSIILSLPASSIPSNSTSDLYSTSTPLRSILEFKNNSKPIKTSPIFRLSLQQSSRILAFSSSNKNNNQDGSAEQFLENNSIADFMRFKKGSDRSS
AELQTAVVSYKKRFPWSILYPFFQVDLVSTIHIADKEYFETIQKELEPYDRVLYEMVASRESLESRRNTAVAKRMKGSRSRGFNILGCIQRQMARILTLD
FQLDYLDYQAENWYHADLDYETFKILQLEKGESFLTFARDMTLKSTKAMVQPAIPEDLGPWRSKLLWASRVLPMPLVGLFIIGTVCDTGSPASEYPELEA
LSRLDFGAAVKVFLAKRLTSEFTQVTADLEEESVIIGERNKAAVEALRRAINEGHNKIAILYGGGHMPDLGRRLREEFDLVPCGVQWITAWSIRNRVLNS
NSLPFLRTMAEVLGWPLNRYQTLALLIFSSVLAIDLWFWELFFGSTVNWISQIASEVGQYVNNSRMIW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G19540 unknown protein Potri.018G080900
[exp]
0 1
AT3G26580 Tetratricopeptide repeat (TPR)... Potri.013G090000
[exp]
5.83 0.9167
AT1G69040 ACR4 ACT domain repeat 4 (.1.2) Potri.012G083000
[exp]
6.48 0.8887
AT1G13990 unknown protein Potri.010G164400
[exp]
7.34 0.9056
AT1G65410 ABCI13, TGD3, A... TRIGALACTOSYLDIACYLGLYCEROL 3,... Potri.014G137000
[exp]
13.41 0.8596
AT1G77930 Chaperone DnaJ-domain superfam... Potri.002G090600
[exp]
13.71 0.8983
AT5G26940 DPD1 defective in pollen organelle ... Potri.005G020600
[exp]
14.31 0.8903
AT4G37370 CYP81D8 "cytochrome P450, family 81, s... Potri.002G121400
[exp]
18.97 0.8754 Pt-IFS1.51
AT1G69040 ACR4 ACT domain repeat 4 (.1.2) Potri.012G102200
[exp]
19.59 0.8824
AT1G20560 AAE1 acyl activating enzyme 1 (.1.2... Potri.005G250700
[exp]
22.22 0.8809
AT5G02420 unknown protein Potri.009G003400
[exp]
22.64 0.8735

Potri.018G080900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.