Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G13250 697 / 0 NYC1, NYC NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G04900 215 / 3e-65 NOL NYC1-like (.1) AT4G13180 76 / 3e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G24360 76 / 6e-15 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G10310 73 / 3e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G06060 72 / 8e-14 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G49670 72 / 3e-13 NQR ARP protein (REF) (.1), ARP protein (REF) (.2) AT5G65205 70 / 5e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55310 69 / 7e-13 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G55290 69 / 1e-12 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G014200 [exp] 215 / 5e-65 AT5G04900 511 / 0.0 NYC1-like (.1) Potri.010G056100 [exp] 82 / 5e-17 AT1G24360 421 / 6e-149 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.008G178700 [exp] 81 / 1e-16 AT1G24360 385 / 1e-134 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.005G106100 [exp] 78 / 8e-16 AT2G47140 234 / 9e-77 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G199900 [exp] 77 / 1e-15 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 75 / 7e-15 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026000 [exp] 74 / 2e-14 AT2G29290 362 / 2e-127 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G206900 [exp] 73 / 5e-14 AT2G47140 229 / 3e-75 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.013G026100 [exp] 72 / 5e-14 AT2G29150 284 / 5e-97 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023644 [exp] 749 / 0 AT4G13250 716 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10034917 [exp] 555 / 0 AT4G13250 543 / 0.0 NON-YELLOW COLORING 1, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10033408 [exp] 215 / 3e-65 AT5G04900 478 / 1e-170 NYC1-like (.1) Lus10034874 [exp] 205 / 2e-62 AT5G04900 466 / 7e-167 NYC1-like (.1) Lus10015821 [exp] 85 / 4e-17 AT1G24360 427 / 5e-148 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10036980 [exp] 82 / 7e-17 AT1G24360 437 / 3e-155 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10040733 [exp] 79 / 3e-16 AT5G06060 346 / 5e-121 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016497 [exp] 79 / 5e-16 AT5G06060 345 / 1e-120 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016498 [exp] 78 / 7e-16 AT5G06060 351 / 7e-123 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016996 [exp] 77 / 1e-15 AT3G51680 211 / 3e-67 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.018G081200.4 pacid=42800594 polypeptide=Potri.018G081200.4.p locus=Potri.018G081200 ID=Potri.018G081200.4.v4.1 annot-version=v4.1 ATGGCTGTTATGATAACTAAGCTTCACATATCCCCACAAAACCTAGATAAACTTAGTTTCGAAGAACACCAGAGAAGTAGATCACTTGGGAGGGGTTTTT TGAGTTCAGGTTTTGGGGTACACAAGAAAAGTTATGCGTTGTGTGTGCAGCAGTGCAGATCTTTTAAGACTAAGGATGGAGGGGGAGTGGAAGAGAAGCA GAAGGAAAAGTATGAAATTCTGAAGGAAAATCAGAGCAAGTCGAAGAAGGGAAGTGGGTTTTGGACTTCTTTGAAAAAGGCTGTTTCTTGGGTTGGTACT TTGCCTTCTCAGTCAAATGAGGAGCATAGAGAGGCAGTTGCTAGATTGGAGGAAGTTTTCTCTTCGGCTGCCCTCCAAATTGGAAGATATATAGTGACCA TGATGAGCACTGGAGTAGTGCTTGCTGTTGGTTTTCAGTTGTCAGGTGGCGACAGTCAGATGAATACACTGATTTGGTATAGCTGGCTTGGAGGGATTAT TATTGGAACTATGATAGGTGCTAACATGGTTTTAGATGAACACTGTCGAGCTGGTCCGCGTAATGTTGTCATAACTGGAAGTACAAGAGGACTGGGAAAA GCTCTTGCTCGAGAATTTCTTCTTTCTGGTGATCATGTAGTTGTTGCTTCACACAGCCCTGAGTCTGTAGACACGACAATTAGAGAGCTTGAGGAGAATC TCAAGGAAGGAATGATCACTGCCTCAAACAGGACAAGTTTGGCACATGCAAAAGTGGTTGGCATAGCCTGTGATGTTTGTGAACCCTCTGATGTGCAGAA ATTAGCAAATTTTGCTGTCAATGAATTTGGTTCTATTGATATATGGATAAACAATGCTGGCACAAATAAAGGTTTTAGACCCTTGTTGCAGTTTACTGAT GAAGATATTAAGCAGATTGTGTCAACAAATTTGGTTGGATCTATTTTATGCACTCAAGAAGCCATGCGAATGATGATGAACCAGCCGAAGGGGGGGCACA TTTTCAACATGGATGGTGCAGGTTCCGGGGGATCTAGTACCCCTCTCACAGCTGTCTATGGGTCAACAAAGTGCGGTCTGAGGCAGCTTCAAGCATCACT TTTGAAGGAGTGTAAGCGATCTAAAGTTGGAATACATACTGCATCTCCAGGAATGGTTCTTACAGATTTGCTCTTGAGTGGCTCGACACTAAAAAACAAA CAAATGTTTAATATCATCTGTGAGCTTCCAGAAACAGTTGCTAGAACTTTAGTCCCAAGGATGCGTGTCGTGAAGGGCACAGGAAAGGCCATCAGTTACT TGACCCCTCCTAGGATATTACTTGCTTTGGTCACTGCATGGTTAAGGCGAGGCCGCTGGTTTGATGACCAGGGAAGGGCATTGTATGCTGCAGAGGCAGA TCGACTCCGTAACTGGGCTGAAAATCGTGCTCAGTTTTCCTTTACAGATGCAATGGAGATGTACACCGAGAATACTTGGGTGTCCGTCTTTTCACTTTCT GTTGTTTGCGCATTCATAATCCTTTCCAGCACAGGCAGCACATTTCCTGGGACCTGA
AA sequence Show only first row Show all	>Potri.018G081200.4 pacid=42800594 polypeptide=Potri.018G081200.4.p locus=Potri.018G081200 ID=Potri.018G081200.4.v4.1 annot-version=v4.1 MAVMITKLHISPQNLDKLSFEEHQRSRSLGRGFLSSGFGVHKKSYALCVQQCRSFKTKDGGGVEEKQKEKYEILKENQSKSKKGSGFWTSLKKAVSWVGT LPSQSNEEHREAVARLEEVFSSAALQIGRYIVTMMSTGVVLAVGFQLSGGDSQMNTLIWYSWLGGIIIGTMIGANMVLDEHCRAGPRNVVITGSTRGLGK ALAREFLLSGDHVVVASHSPESVDTTIRELEENLKEGMITASNRTSLAHAKVVGIACDVCEPSDVQKLANFAVNEFGSIDIWINNAGTNKGFRPLLQFTD EDIKQIVSTNLVGSILCTQEAMRMMMNQPKGGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQLQASLLKECKRSKVGIHTASPGMVLTDLLLSGSTLKNK QMFNIICELPETVARTLVPRMRVVKGTGKAISYLTPPRILLALVTAWLRRGRWFDDQGRALYAAEADRLRNWAENRAQFSFTDAMEMYTENTWVSVFSLS VVCAFIILSSTGSTFPGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G13250		NYC1, NYC	NON-YELLOW COLORING 1, NAD(P)-...		Potri.018G081200 [exp]	0	1
AT3G07700			Protein kinase superfamily pro...		Potri.014G168600 [exp]	1.41	0.9681
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Potri.014G139500 [exp]	1.73	0.9717	Pt-VAR2.3
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Potri.015G105100 [exp]	3.87	0.9646	Pt-CLPC.2
AT1G73990		SPPA1, SPPA	signal peptide peptidase (.1)		Potri.015G047500 [exp]	4.24	0.9548
AT2G29650		PHT4;1, ANTR1	anion transporter 1, phosphate...		Potri.009G043800 [exp]	5.29	0.9585
AT3G17000		UBC32	ubiquitin-conjugating enzyme 3...		Potri.010G143900 [exp]	5.38	0.9235
AT1G54570			Esterase/lipase/thioesterase f...		Potri.013G033300 [exp]	5.47	0.9583
					Potri.018G099301 [exp]	5.65	0.9319
AT3G60070			Major facilitator superfamily ...		Potri.001G232100 [exp]	5.83	0.9316
AT2G16980			Major facilitator superfamily ...		Potri.004G178600 [exp]	6.92	0.9458

Compare expression of checked genes

Potri.018G081200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.